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The map label for this gene is yafD [C]

Identifier: 152968799

GI number: 152968799

Start: 258065

End: 258841

Strand: Direct

Name: yafD [C]

Synonym: KPN_00224

Alternate gene names: 152968799

Gene position: 258065-258841 (Clockwise)

Preceding gene: 152968798

Following gene: 152968800

Centisome position: 4.86

GC content: 58.56

Gene sequence:

>777_bases
ATGCGCTATGTCGCCGGACAACCTGCGGAGAGAATATTGCCTCCGGGGGCGTTTGCGGGCGTGAGTCCGGTTTATCCCGC
CGGTACGCCATTAAGCAGCGATGAGAAGATCCGCGTGCTGGTATGGAATATCTTCAAGCAGCAGCGCGCAGAGTGGCAGT
CGGTCCTCAAAAATTTCGGCAAAGATGCGCATTTGGTCCTGTTGCAGGAGGCGCAAACTACCCCAGAACTGGTCCGGTTC
GCGACTTCAAACTATCTGGCCGCCGATCAGGTGCCGGCGCTGGTATTGCCGCAGCATCCTTCCGGCGTAATGACGCTGGC
CTCCGCGCACCCCATCTATTGCTGTCCGCTGCGCGAGCGCGAGCCTATTTTGCGATTGCCGAAATCGGCGTTAGTGACCG
TTTATCCGCTGCCGGATGCGCGGTTGTTGATGGTAGTCAATATCCATGCCGTCAACTTTAGCCTTGGCGTCGACGTCTAC
AGCAAACAGCTGCTGCCAATTGGCGATCAGATCGCCCATCACAGCGGGCCGGTGATCATGGCCGGCGACTTCAATGCCTG
GAGCCGGCCGCGGATGAATGCGCTGTACCGCTTTGCGCGTGAGATGTCGTTACGCGAAGTTCGTTTCTCAGACGATCAGC
GCCGCCGCGCGTTTGGTCGTCCCCTCGATTTTGTGTTCTACCGTGGGTTAAGCGTGCACGATGCTTCCGTGCTGGTGACC
CGCGCCTCCGACCACAACCCGCTACTAGTCGAATTCAGTCCCGGCAAGCCTGATTAA

Upstream 100 bases:

>100_bases
AAGTGTATGGGAAAATCCCTATAACAGAATAACCAGTCGTCGTCGGGCTGGTTTCTGTTATCGAGGATTAATGCCCAAAT
TGCGAAAGAACACCTACGCC

Downstream 100 bases:

>100_bases
TTTAAGGTTGGTCAGGCCTGCCATGGGGCAGGCCTGCGCATGCATGGTGCTGCCTTTTATTACTCAAAAAAAACCGTAAG
GACAAGACAACATGACAACA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MRYVAGQPAERILPPGAFAGVSPVYPAGTPLSSDEKIRVLVWNIFKQQRAEWQSVLKNFGKDAHLVLLQEAQTTPELVRF
ATSNYLAADQVPALVLPQHPSGVMTLASAHPIYCCPLREREPILRLPKSALVTVYPLPDARLLMVVNIHAVNFSLGVDVY
SKQLLPIGDQIAHHSGPVIMAGDFNAWSRPRMNALYRFAREMSLREVRFSDDQRRRAFGRPLDFVFYRGLSVHDASVLVT
RASDHNPLLVEFSPGKPD

Sequences:

>Translated_258_residues
MRYVAGQPAERILPPGAFAGVSPVYPAGTPLSSDEKIRVLVWNIFKQQRAEWQSVLKNFGKDAHLVLLQEAQTTPELVRF
ATSNYLAADQVPALVLPQHPSGVMTLASAHPIYCCPLREREPILRLPKSALVTVYPLPDARLLMVVNIHAVNFSLGVDVY
SKQLLPIGDQIAHHSGPVIMAGDFNAWSRPRMNALYRFAREMSLREVRFSDDQRRRAFGRPLDFVFYRGLSVHDASVLVT
RASDHNPLLVEFSPGKPD
>Mature_258_residues
MRYVAGQPAERILPPGAFAGVSPVYPAGTPLSSDEKIRVLVWNIFKQQRAEWQSVLKNFGKDAHLVLLQEAQTTPELVRF
ATSNYLAADQVPALVLPQHPSGVMTLASAHPIYCCPLREREPILRLPKSALVTVYPLPDARLLMVVNIHAVNFSLGVDVY
SKQLLPIGDQIAHHSGPVIMAGDFNAWSRPRMNALYRFAREMSLREVRFSDDQRRRAFGRPLDFVFYRGLSVHDASVLVT
RASDHNPLLVEFSPGKPD

Specific function: Unknown

COG id: COG3021

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0294 family [H]

Homologues:

Organism=Escherichia coli, GI1786403, Length=258, Percent_Identity=88.3720930232558, Blast_Score=480, Evalue=1e-137,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005135
- InterPro:   IPR022958 [H]

Pfam domain/function: PF03372 Exo_endo_phos [H]

EC number: NA

Molecular weight: Translated: 28832; Mature: 28832

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYVAGQPAERILPPGAFAGVSPVYPAGTPLSSDEKIRVLVWNIFKQQRAEWQSVLKNFG
CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHC
KDAHLVLLQEAQTTPELVRFATSNYLAADQVPALVLPQHPSGVMTLASAHPIYCCPLRER
CCEEEEEEECCCCCHHHHHHHHCCCEECCCCCEEEECCCCCCEEEECCCCCEEEECCCCC
EPILRLPKSALVTVYPLPDARLLMVVNIHAVNFSLGVDVYSKQLLPIGDQIAHHSGPVIM
CHHHHCCCCCEEEEEECCCCEEEEEEEEEEEEEEECCHHHHCCCCCCCHHHHHCCCCEEE
AGDFNAWSRPRMNALYRFAREMSLREVRFSDDQRRRAFGRPLDFVFYRGLSVHDASVLVT
EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHEEEECCCCCCCCEEEEE
RASDHNPLLVEFSPGKPD
ECCCCCCEEEEECCCCCC
>Mature Secondary Structure
MRYVAGQPAERILPPGAFAGVSPVYPAGTPLSSDEKIRVLVWNIFKQQRAEWQSVLKNFG
CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHC
KDAHLVLLQEAQTTPELVRFATSNYLAADQVPALVLPQHPSGVMTLASAHPIYCCPLRER
CCEEEEEEECCCCCHHHHHHHHCCCEECCCCCEEEECCCCCCEEEECCCCCEEEECCCCC
EPILRLPKSALVTVYPLPDARLLMVVNIHAVNFSLGVDVYSKQLLPIGDQIAHHSGPVIM
CHHHHCCCCCEEEEEECCCCEEEEEEEEEEEEEEECCHHHHCCCCCCCHHHHHCCCCEEE
AGDFNAWSRPRMNALYRFAREMSLREVRFSDDQRRRAFGRPLDFVFYRGLSVHDASVLVT
EECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHEEEECCCCCCCCEEEEE
RASDHNPLLVEFSPGKPD
ECCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA