Click here to switch to the map view.

The map label for this gene is ygdI [H]

Identifier: 152968623

GI number: 152968623

Start: 47055

End: 47288

Strand: Direct

Name: ygdI [H]

Synonym: KPN_00042

Alternate gene names: 152968623

Gene position: 47055-47288 (Clockwise)

Preceding gene: 152968622

Following gene: 152968624

Centisome position: 0.89

GC content: 55.13

Gene sequence:

>234_bases
ATGCGGAACAATATTCTGGTGGCATCCGCACTGGCAGCGACGGCAATCATGTTCGTGGCCGGCTGCTCATCGAATCAGTC
GATCAAAACCACCGACGGCAAGACCATTGTCACCAGCGGCAAACCGCAGGTGGATGATGACACCGGCCTTGTCTCATACA
AAAATGCCGAAACCGGCCGCGTGGAGCAGATTAACCGCGACCAGGTGAAGTCCATGGACGAGCTGGATAACTAA

Upstream 100 bases:

>100_bases
AGCCATCTTCAGAGAGTTCTGCTTTTAACCCCCTGTCGGGTCAGGCTAACTATAGTTAGCACCATAACGATACCTATTGA
TGAAAAGACAGGAGGATACA

Downstream 100 bases:

>100_bases
GGCCTGACGTTAACCCTCAGGGCGCGCGTTGCGTAAGCCATCGCGACATAAATCACAGTTATCATTGTAAGCGGTTCGCT
TAACTGTCTACACTCTTGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 77; Mature: 77

Protein sequence:

>77_residues
MRNNILVASALAATAIMFVAGCSSNQSIKTTDGKTIVTSGKPQVDDDTGLVSYKNAETGRVEQINRDQVKSMDELDN

Sequences:

>Translated_77_residues
MRNNILVASALAATAIMFVAGCSSNQSIKTTDGKTIVTSGKPQVDDDTGLVSYKNAETGRVEQINRDQVKSMDELDN
>Mature_77_residues
MRNNILVASALAATAIMFVAGCSSNQSIKTTDGKTIVTSGKPQVDDDTGLVSYKNAETGRVEQINRDQVKSMDELDN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygdR [H]

Homologues:

Organism=Escherichia coli, GI87082162, Length=71, Percent_Identity=50.7042253521127, Blast_Score=66, Evalue=4e-13,
Organism=Escherichia coli, GI1789198, Length=68, Percent_Identity=48.5294117647059, Blast_Score=64, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010305 [H]

Pfam domain/function: PF06004 DUF903 [H]

EC number: NA

Molecular weight: Translated: 8234; Mature: 8234

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNNILVASALAATAIMFVAGCSSNQSIKTTDGKTIVTSGKPQVDDDTGLVSYKNAETGR
CCCCEEHHHHHHHHHHHHHHCCCCCCCEEECCCCEEEECCCCCCCCCCCEEEECCCCCCC
VEQINRDQVKSMDELDN
CCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MRNNILVASALAATAIMFVAGCSSNQSIKTTDGKTIVTSGKPQVDDDTGLVSYKNAETGR
CCCCEEHHHHHHHHHHHHHHCCCCCCCEEECCCCEEEECCCCCCCCCCCEEEECCCCCCC
VEQINRDQVKSMDELDN
CCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]