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The map label for this gene is ykoC [H]

Identifier: 151222793

GI number: 151222793

Start: 2848724

End: 2849557

Strand: Reverse

Name: ykoC [H]

Synonym: NWMN_2581

Alternate gene names: 151222793

Gene position: 2849557-2848724 (Counterclockwise)

Preceding gene: 151222794

Following gene: 151222792

Centisome position: 98.98

GC content: 29.86

Gene sequence:

>834_bases
ATGAATCAATATAATACTATAGGTTTTCACCCGGGAAATAGTCGTATTCATCAATTAAATGCGACTGTTAAACTTTTATT
CTTATTAGTTGTTTCTATTTCTGCAATGGTGACTTATGACACAAGATATTTAATTTTAATTAGTGCTTCATCTATTTTAT
TGGTCAAATATGCTCATATTGAATGGAAACAAGTTCGCTTTGTTGTTAAATTCATTCTGTTTTTCACAATATTAAATATT
ATTGCCGTGTACATATTTGACCCTGAATATGGTGTGAAGATTTATAATCAGCGTACAGAGTTAGTCAATGGTATTGGTCG
ATTTACGCTAACATCACAGGAATTATTCTATCTTTTTAATCTAATATTAAAATATATTAGTACAGTTCCTTTAGCGTTAA
TATTTTTATTCACAACGAATCCGAGTCATTTTGCTGCAAGTTTAAATCAGCTAGGTGTGAATTATAAAATCAGTTACGCA
GTCTCACTAGCATTAAGGTATATTCCAGATATTCAAGAAACATATTTTAATATTTCACAAGCGCAACAAGCAAGAGGATA
TGATAATTCGAAAAAAGCAAAATTTACTAGCCGTGTTAAAGGTATCAAACGCATTGTGTTACCTTTAATATTTTCTAGTA
TCGAAAGAATTGACACTATTAGTACTGCTATGGAGTTAAGACAATTCGGACAGTATAAAAGGAGAACCTGGTACGTCAAA
AAACAATTAAAAAAAGATGATTATGTTGTTTTGTGTTTGACGTTAATACTTCTGATGTTAGTAGTTACATTATTCTTTTT
AAATAATAGTCGATATTTCAACCCGTGGCATTAG

Upstream 100 bases:

>100_bases
GACAAACATCGCTATTTGAAATGGCCGAATATATAGGGATTAGCGAGCCACAGAAATTAGTACAATTATTTATTAACCAT
GATAGGAAGGTGAGACGCCA

Downstream 100 bases:

>100_bases
TATTCATATAAATAGTCTTTAAATAGAAATAGGAGGGAGACATTTAATGATAAATACTGAAAGATTAAATTTAATGATTC
CAAGTTCCTCGCATTTAATT

Product: cobalt transport family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MNQYNTIGFHPGNSRIHQLNATVKLLFLLVVSISAMVTYDTRYLILISASSILLVKYAHIEWKQVRFVVKFILFFTILNI
IAVYIFDPEYGVKIYNQRTELVNGIGRFTLTSQELFYLFNLILKYISTVPLALIFLFTTNPSHFAASLNQLGVNYKISYA
VSLALRYIPDIQETYFNISQAQQARGYDNSKKAKFTSRVKGIKRIVLPLIFSSIERIDTISTAMELRQFGQYKRRTWYVK
KQLKKDDYVVLCLTLILLMLVVTLFFLNNSRYFNPWH

Sequences:

>Translated_277_residues
MNQYNTIGFHPGNSRIHQLNATVKLLFLLVVSISAMVTYDTRYLILISASSILLVKYAHIEWKQVRFVVKFILFFTILNI
IAVYIFDPEYGVKIYNQRTELVNGIGRFTLTSQELFYLFNLILKYISTVPLALIFLFTTNPSHFAASLNQLGVNYKISYA
VSLALRYIPDIQETYFNISQAQQARGYDNSKKAKFTSRVKGIKRIVLPLIFSSIERIDTISTAMELRQFGQYKRRTWYVK
KQLKKDDYVVLCLTLILLMLVVTLFFLNNSRYFNPWH
>Mature_277_residues
MNQYNTIGFHPGNSRIHQLNATVKLLFLLVVSISAMVTYDTRYLILISASSILLVKYAHIEWKQVRFVVKFILFFTILNI
IAVYIFDPEYGVKIYNQRTELVNGIGRFTLTSQELFYLFNLILKYISTVPLALIFLFTTNPSHFAASLNQLGVNYKISYA
VSLALRYIPDIQETYFNISQAQQARGYDNSKKAKFTSRVKGIKRIVLPLIFSSIERIDTISTAMELRQFGQYKRRTWYVK
KQLKKDDYVVLCLTLILLMLVVTLFFLNNSRYFNPWH

Specific function: Part of the ABC transporter complex YkoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Probably responsible for the translocation of the substrate across the membrane (Probable)

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 32325; Mature: 32325

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQYNTIGFHPGNSRIHQLNATVKLLFLLVVSISAMVTYDTRYLILISASSILLVKYAHI
CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEEEECCCEEEEEEHHC
EWKQVRFVVKFILFFTILNIIAVYIFDPEYGVKIYNQRTELVNGIGRFTLTSQELFYLFN
HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEHHHHHHHHHHHHHEECHHHHHHHHH
LILKYISTVPLALIFLFTTNPSHFAASLNQLGVNYKISYAVSLALRYIPDIQETYFNISQ
HHHHHHHHHHHHHHHHEECCCHHHHHHHHHCCCCEEHHHHHHHHHHHCCCHHHHHHHHHH
AQQARGYDNSKKAKFTSRVKGIKRIVLPLIFSSIERIDTISTAMELRQFGQYKRRTWYVK
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQLKKDDYVVLCLTLILLMLVVTLFFLNNSRYFNPWH
HHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNQYNTIGFHPGNSRIHQLNATVKLLFLLVVSISAMVTYDTRYLILISASSILLVKYAHI
CCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCEEEEEEECCCEEEEEEHHC
EWKQVRFVVKFILFFTILNIIAVYIFDPEYGVKIYNQRTELVNGIGRFTLTSQELFYLFN
HHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEHHHHHHHHHHHHHEECHHHHHHHHH
LILKYISTVPLALIFLFTTNPSHFAASLNQLGVNYKISYAVSLALRYIPDIQETYFNISQ
HHHHHHHHHHHHHHHHEECCCHHHHHHHHHCCCCEEHHHHHHHHHHHCCCHHHHHHHHHH
AQQARGYDNSKKAKFTSRVKGIKRIVLPLIFSSIERIDTISTAMELRQFGQYKRRTWYVK
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQLKKDDYVVLCLTLILLMLVVTLFFLNNSRYFNPWH
HHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]