BacMap

Definition	Staphylococcus aureus subsp. aureus str. Newman chromosome, complete genome.
Accession	NC_009641
Length	2,878,897

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The map label for this gene is yxbG [H]

Identifier: 151222581

GI number: 151222581

Start: 2606868

End: 2607506

Strand: Reverse

Name: yxbG [H]

Synonym: NWMN_2369

Alternate gene names: 151222581

Gene position: 2607506-2606868 (Counterclockwise)

Preceding gene: 151222583

Following gene: 151222580

Centisome position: 90.57

GC content: 40.22

Gene sequence:

>639_bases
GTGGATAATGCAAGCGAACAACAAGTGGTAGACTTTGTGTCTGACATAAAGGAACAGTTTGGAAGAATCGATGTGTTGTT
TAATAATGCCGGTGTGGATAATGCGGCTGATAGAATTCATGAGTATCCAATAGATGTGTATGACAAGATTATGAATGTAG
ATATGCGTGGGACATTTTTAATGACGAAAATGATGTTACCTTTAATGATGAATCAAGGTGGCTCTATTGTTAATACGTCT
TCATTTTCCGGACAAGCAGCAGACTTGTATCGCTCTGGATATAATGCTGCGAAAGGTGCAGTGATTAATTTTACAAAATC
AATCGCAATTGAGTATGGCCGTGATAGCATTCGAGCCAATGCGATTGCACCAGGTACAATTGAAACCCCGTTAGTAGATA
AACTGACAGGTACGAGTGAGGATGATGCAGGTAAAACATTTAGAGAAAATCAAAAATGGATGACTCCGCTGGGACGTTTA
GGTAAACCAGAAGAAGTTGCTAAATTAGTAGTCTTCTTAGCATCTGACGACAGTTCATTCATAACTGGAGAGACGATTCG
AATTGATGGTGGTGTGATGGCTTACACATGGCCTGGCGAGATGTTAAGTGATGATTCGTGGAAGCGGACATTGGAATAA

Upstream 100 bases:

>100_bases
TCAATAAGGTGCGTATGTATTGGCGGTAGACATAGCTGAAGCGGTATCGGAGACTGTCGATAAAATTAAAAGTAATGGTG
ACAATGCGAAGGCGTATAAT

Downstream 100 bases:

>100_bases
TTATTTAAAATCGATATCCAGTGGAAAAGAATTTGGCATGAAGTAGGCAATGTATGCATATTGTCGCAATGAAAGACATT
TAAAGCGGAGATTAATTAAT

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MDNASEQQVVDFVSDIKEQFGRIDVLFNNAGVDNAADRIHEYPIDVYDKIMNVDMRGTFLMTKMMLPLMMNQGGSIVNTS
SFSGQAADLYRSGYNAAKGAVINFTKSIAIEYGRDSIRANAIAPGTIETPLVDKLTGTSEDDAGKTFRENQKWMTPLGRL
GKPEEVAKLVVFLASDDSSFITGETIRIDGGVMAYTWPGEMLSDDSWKRTLE

Sequences:

>Translated_212_residues
MDNASEQQVVDFVSDIKEQFGRIDVLFNNAGVDNAADRIHEYPIDVYDKIMNVDMRGTFLMTKMMLPLMMNQGGSIVNTS
SFSGQAADLYRSGYNAAKGAVINFTKSIAIEYGRDSIRANAIAPGTIETPLVDKLTGTSEDDAGKTFRENQKWMTPLGRL
GKPEEVAKLVVFLASDDSSFITGETIRIDGGVMAYTWPGEMLSDDSWKRTLE
>Mature_212_residues
MDNASEQQVVDFVSDIKEQFGRIDVLFNNAGVDNAADRIHEYPIDVYDKIMNVDMRGTFLMTKMMLPLMMNQGGSIVNTS
SFSGQAADLYRSGYNAAKGAVINFTKSIAIEYGRDSIRANAIAPGTIETPLVDKLTGTSEDDAGKTFRENQKWMTPLGRL
GKPEEVAKLVVFLASDDSSFITGETIRIDGGVMAYTWPGEMLSDDSWKRTLE

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI59889578, Length=191, Percent_Identity=35.0785340314136, Blast_Score=117, Evalue=9e-27,
Organism=Homo sapiens, GI15277342, Length=184, Percent_Identity=34.2391304347826, Blast_Score=112, Evalue=2e-25,
Organism=Homo sapiens, GI66933014, Length=199, Percent_Identity=35.1758793969849, Blast_Score=111, Evalue=4e-25,
Organism=Homo sapiens, GI32483357, Length=181, Percent_Identity=35.9116022099448, Blast_Score=108, Evalue=5e-24,
Organism=Homo sapiens, GI19923817, Length=208, Percent_Identity=34.1346153846154, Blast_Score=105, Evalue=3e-23,
Organism=Homo sapiens, GI40254992, Length=192, Percent_Identity=32.2916666666667, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI5031737, Length=180, Percent_Identity=29.4444444444444, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI10190704, Length=193, Percent_Identity=31.0880829015544, Blast_Score=88, Evalue=5e-18,
Organism=Homo sapiens, GI4758504, Length=203, Percent_Identity=30.0492610837438, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI126723750, Length=152, Percent_Identity=32.8947368421053, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI7705925, Length=177, Percent_Identity=31.0734463276836, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI31542939, Length=196, Percent_Identity=27.0408163265306, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI4503301, Length=185, Percent_Identity=29.1891891891892, Blast_Score=71, Evalue=6e-13,
Organism=Homo sapiens, GI4504505, Length=198, Percent_Identity=32.8282828282828, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI83715985, Length=204, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI33667109, Length=119, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=6e-12,
Organism=Escherichia coli, GI87082100, Length=177, Percent_Identity=37.8531073446328, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787335, Length=194, Percent_Identity=34.5360824742268, Blast_Score=104, Evalue=3e-24,
Organism=Escherichia coli, GI1788459, Length=178, Percent_Identity=36.5168539325843, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1790717, Length=196, Percent_Identity=30.6122448979592, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1789208, Length=178, Percent_Identity=32.5842696629214, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1789378, Length=190, Percent_Identity=28.9473684210526, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786812, Length=196, Percent_Identity=29.5918367346939, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789057, Length=196, Percent_Identity=29.5918367346939, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI2367175, Length=198, Percent_Identity=30.3030303030303, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI87082160, Length=187, Percent_Identity=27.2727272727273, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787905, Length=192, Percent_Identity=26.0416666666667, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI2367365, Length=181, Percent_Identity=27.0718232044199, Blast_Score=65, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=188, Percent_Identity=38.2978723404255, Blast_Score=125, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17561402, Length=190, Percent_Identity=37.8947368421053, Blast_Score=121, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI71994600, Length=175, Percent_Identity=38.2857142857143, Blast_Score=120, Evalue=5e-28,
Organism=Caenorhabditis elegans, GI17562904, Length=210, Percent_Identity=34.2857142857143, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17562910, Length=196, Percent_Identity=34.1836734693878, Blast_Score=103, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17551412, Length=188, Percent_Identity=34.0425531914894, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17560676, Length=190, Percent_Identity=32.6315789473684, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17555706, Length=194, Percent_Identity=34.5360824742268, Blast_Score=100, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17560150, Length=187, Percent_Identity=33.6898395721925, Blast_Score=100, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17538480, Length=187, Percent_Identity=33.6898395721925, Blast_Score=100, Evalue=5e-22,
Organism=Caenorhabditis elegans, GI17544670, Length=198, Percent_Identity=31.8181818181818, Blast_Score=99, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI25147288, Length=185, Percent_Identity=31.3513513513514, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17531453, Length=208, Percent_Identity=31.25, Blast_Score=97, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17562990, Length=180, Percent_Identity=33.8888888888889, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17562906, Length=197, Percent_Identity=31.9796954314721, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17559104, Length=207, Percent_Identity=31.4009661835749, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17562908, Length=201, Percent_Identity=32.3383084577114, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17563726, Length=179, Percent_Identity=32.4022346368715, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17560332, Length=189, Percent_Identity=32.2751322751323, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17565030, Length=182, Percent_Identity=32.967032967033, Blast_Score=90, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI193204405, Length=200, Percent_Identity=30.5, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI72000259, Length=188, Percent_Identity=32.9787234042553, Blast_Score=89, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17560220, Length=187, Percent_Identity=29.9465240641711, Blast_Score=85, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17538182, Length=200, Percent_Identity=30, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17561272, Length=197, Percent_Identity=29.9492385786802, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17536651, Length=205, Percent_Identity=30.7317073170732, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17538486, Length=187, Percent_Identity=28.8770053475936, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17508651, Length=193, Percent_Identity=27.4611398963731, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17536025, Length=208, Percent_Identity=29.3269230769231, Blast_Score=72, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=181, Percent_Identity=28.7292817679558, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115534694, Length=170, Percent_Identity=30.5882352941176, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=187, Percent_Identity=29.4117647058824, Blast_Score=85, Evalue=7e-18,
Organism=Saccharomyces cerevisiae, GI6323882, Length=189, Percent_Identity=26.4550264550265, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21357041, Length=187, Percent_Identity=36.8983957219251, Blast_Score=117, Evalue=4e-27,
Organism=Drosophila melanogaster, GI28571526, Length=190, Percent_Identity=37.8947368421053, Blast_Score=117, Evalue=6e-27,
Organism=Drosophila melanogaster, GI24644339, Length=190, Percent_Identity=34.7368421052632, Blast_Score=112, Evalue=1e-25,
Organism=Drosophila melanogaster, GI23397609, Length=173, Percent_Identity=36.9942196531792, Blast_Score=109, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24639444, Length=196, Percent_Identity=33.1632653061224, Blast_Score=108, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24644337, Length=171, Percent_Identity=38.0116959064327, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI21355319, Length=177, Percent_Identity=36.1581920903955, Blast_Score=105, Evalue=2e-23,
Organism=Drosophila melanogaster, GI17737361, Length=204, Percent_Identity=29.9019607843137, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI21358495, Length=158, Percent_Identity=32.9113924050633, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24643142, Length=169, Percent_Identity=31.3609467455621, Blast_Score=71, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 23386; Mature: 23386

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNASEQQVVDFVSDIKEQFGRIDVLFNNAGVDNAADRIHEYPIDVYDKIMNVDMRGTFL
CCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCHHHHHHHHCCCCCHHHH
MTKMMLPLMMNQGGSIVNTSSFSGQAADLYRSGYNAAKGAVINFTKSIAIEYGRDSIRAN
HHHHHHHHHHCCCCCEEECCCCCCHHHHHHHCCCCCCCCCEEEEHHHHEEECCCCHHCCC
AIAPGTIETPLVDKLTGTSEDDAGKTFRENQKWMTPLGRLGKPEEVAKLVVFLASDDSSF
CCCCCCCCCCCHHHHCCCCCCCCCCHHHHCCHHHHHHHCCCCHHHHHHEEEEEECCCCCE
ITGETIRIDGGVMAYTWPGEMLSDDSWKRTLE
ECCCEEEECCCEEEEECCCHHHCCCCHHHCCC
>Mature Secondary Structure
MDNASEQQVVDFVSDIKEQFGRIDVLFNNAGVDNAADRIHEYPIDVYDKIMNVDMRGTFL
CCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHCCHHHHHHHHCCCCCHHHH
MTKMMLPLMMNQGGSIVNTSSFSGQAADLYRSGYNAAKGAVINFTKSIAIEYGRDSIRAN
HHHHHHHHHHCCCCCEEECCCCCCHHHHHHHCCCCCCCCCEEEEHHHHEEECCCCHHCCC
AIAPGTIETPLVDKLTGTSEDDAGKTFRENQKWMTPLGRLGKPEEVAKLVVFLASDDSSF
CCCCCCCCCCCHHHHCCCCCCCCCCHHHHCCHHHHHHHCCCCHHHHHHEEEEEECCCCCE
ITGETIRIDGGVMAYTWPGEMLSDDSWKRTLE
ECCCEEEECCCEEEEECCCHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584049; 9384377 [H]