Click here to switch to the map view.

The map label for this gene is pdp

Identifier: 151222252

GI number: 151222252

Start: 2257267

End: 2258568

Strand: Reverse

Name: pdp

Synonym: NWMN_2040

Alternate gene names: 151222252

Gene position: 2258568-2257267 (Counterclockwise)

Preceding gene: 151222253

Following gene: 151222251

Centisome position: 78.45

GC content: 36.1

Gene sequence:

>1302_bases
ATGAGAATGATAGACATTATTGAGAAAAAGCGTGACGGTCATACACTAACAACGGAAGAAATTAATTTCTTTATTGGCGG
CTATGTTAAAGGGGATATTCCTGATTACCAAGCATCAAGTTTAGCAATGGCGATTTATTTCCAAGATATGAATGATGATG
AGCGTGCAGCATTAACGATGGCTATGGTTAATTCTGGTGATATGATAGATTTGAGTGATATTAAAGGTGTCAAAGTAGAT
AAGCACTCAACAGGTGGTGTAGGAGATACAACTACATTGGTTTTAGCACCATTAGTAGCAGCTGTAGATGTTCCTGTTGC
AAAAATGAGTGGGCGTGGATTAGGTCATACAGGTGGTACGATTGATAAATTAGAAGCAATTGATGGTTTTCATGTTGAAA
TAGATGAAGCAACATTTGTGAAATTGGTTAATGAAAATAAAGTGGCAGTTGTAGGACAATCAGGAAATTTAACTCCTGCA
GACAAAAAATTATATGCCTTAAGGGATGTTACTGGTACTGTCAATTCAATACCATTAATTGCCTCTTCAATTATGAGTAA
AAAGATTGCTGCTGGTGCAGATGCAATTGTATTAGATGTAAAAACTGGTAGCGGTGCATTTATGAAAACATTAGAAGATG
CTGAAGCATTAGCGCACGCAATGGTACGTATTGGTAATAATGTGGGACGTAATACGATGGCGATTATTTCTGATATGAAT
CAGCCACTTGGACGTGCGATTGGCAATGCGCTTGAGTTACAAGAAGCAATTGATACGTTGAAAGGACAAGGTCCGAAAGA
TTTAACAGAACTTGTATTAACATTAGGTTCTCAAATGGTTGTACTTGCAAACAAAGCTGAAACGCTTGAAGAAGCGAGAG
CGTTGCTAATTGAGGCAATTAATTCAGGTGCAGCATTAGAAAAATTCAAAACATTTATTAAAAACCAAGGTGGCGACGAA
ACTGTTATTGACCATCCAGAGCGTTTGCCACAAGCTCAATATCAAATTGAATATAAAGCTAAAAAATCAGGTTATGTGAC
TGAATTAGTCTCTAACGATATAGGTGTCGCTTCGATGATGTTAGGAGCGGGACGTTTAACAAAAGAGGATGATATTGATT
TAGCGGTTGGTATTGTTTTAAATAAAAAAATTGGTGATAAAGTAGAAGAAGGAGAATCATTATTAACGATTCACAGTAAT
CGCCAAGATGTAGACGATGTTGTTAAAAAATTAGATTCAAGCATAACAATTGCTGATCATGTTGTATCGCCTACATTAAT
TCATAAAATCATTACAGAATAG

Upstream 100 bases:

>100_bases
TCGATAGCTTGCTATAATAATTTTCGCTTGTGCTTTTAAAAATGGACTAGAGAAAGCGCAGATGCTTTGTCCTAAGCTTT
TTAAGAAAAGGATGATAAAA

Downstream 100 bases:

>100_bases
GAGTTGAAGCTGATTGAACATACTAAGATATTTATTAGGAATAGGTTTTAGTGTAATAGGTGTATTGCATTTTACACGAG
AACGACAATTTAGAAATATC

Product: pyrimidine-nucleoside phosphorylase

Products: NA

Alternate protein names: PYNP

Number of amino acids: Translated: 433; Mature: 433

Protein sequence:

>433_residues
MRMIDIIEKKRDGHTLTTEEINFFIGGYVKGDIPDYQASSLAMAIYFQDMNDDERAALTMAMVNSGDMIDLSDIKGVKVD
KHSTGGVGDTTTLVLAPLVAAVDVPVAKMSGRGLGHTGGTIDKLEAIDGFHVEIDEATFVKLVNENKVAVVGQSGNLTPA
DKKLYALRDVTGTVNSIPLIASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEALAHAMVRIGNNVGRNTMAIISDMN
QPLGRAIGNALELQEAIDTLKGQGPKDLTELVLTLGSQMVVLANKAETLEEARALLIEAINSGAALEKFKTFIKNQGGDE
TVIDHPERLPQAQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIHSN
RQDVDDVVKKLDSSITIADHVVSPTLIHKIITE

Sequences:

>Translated_433_residues
MRMIDIIEKKRDGHTLTTEEINFFIGGYVKGDIPDYQASSLAMAIYFQDMNDDERAALTMAMVNSGDMIDLSDIKGVKVD
KHSTGGVGDTTTLVLAPLVAAVDVPVAKMSGRGLGHTGGTIDKLEAIDGFHVEIDEATFVKLVNENKVAVVGQSGNLTPA
DKKLYALRDVTGTVNSIPLIASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEALAHAMVRIGNNVGRNTMAIISDMN
QPLGRAIGNALELQEAIDTLKGQGPKDLTELVLTLGSQMVVLANKAETLEEARALLIEAINSGAALEKFKTFIKNQGGDE
TVIDHPERLPQAQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIHSN
RQDVDDVVKKLDSSITIADHVVSPTLIHKIITE
>Mature_433_residues
MRMIDIIEKKRDGHTLTTEEINFFIGGYVKGDIPDYQASSLAMAIYFQDMNDDERAALTMAMVNSGDMIDLSDIKGVKVD
KHSTGGVGDTTTLVLAPLVAAVDVPVAKMSGRGLGHTGGTIDKLEAIDGFHVEIDEATFVKLVNENKVAVVGQSGNLTPA
DKKLYALRDVTGTVNSIPLIASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEALAHAMVRIGNNVGRNTMAIISDMN
QPLGRAIGNALELQEAIDTLKGQGPKDLTELVLTLGSQMVVLANKAETLEEARALLIEAINSGAALEKFKTFIKNQGGDE
TVIDHPERLPQAQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIHSN
RQDVDDVVKKLDSSITIADHVVSPTLIHKIITE

Specific function: The Enzymes Which Catalyze The Reversible Phosphorolysis Of Pyrimidine Nucleosides Are Involved In The Degradation Of These Compounds And In Their Utilization As Carbon And Energy Sources, Or In The Rescue Of Pyrimidine Bases For Nucleotide Synthesis. [C

COG id: COG0213

COG function: function code F; Thymidine phosphorylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family

Homologues:

Organism=Homo sapiens, GI166158925, Length=409, Percent_Identity=38.1418092909535, Blast_Score=265, Evalue=5e-71,
Organism=Homo sapiens, GI4503445, Length=409, Percent_Identity=38.1418092909535, Blast_Score=265, Evalue=5e-71,
Organism=Homo sapiens, GI166158922, Length=409, Percent_Identity=38.1418092909535, Blast_Score=265, Evalue=5e-71,
Organism=Escherichia coli, GI1790842, Length=404, Percent_Identity=43.8118811881188, Blast_Score=324, Evalue=6e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PDP_STAA3 (Q2FEZ3)

Other databases:

- EMBL:   CP000255
- RefSeq:   YP_494735.2
- ProteinModelPortal:   Q2FEZ3
- SMR:   Q2FEZ3
- STRING:   Q2FEZ3
- EnsemblBacteria:   EBSTAT00000036373
- GeneID:   3915249
- GenomeReviews:   CP000255_GR
- KEGG:   saa:SAUSA300_2089
- eggNOG:   COG0213
- GeneTree:   EBGT00050000025450
- HOGENOM:   HBG288505
- ProtClustDB:   PRK06078
- InterPro:   IPR000312
- InterPro:   IPR017459
- InterPro:   IPR020072
- InterPro:   IPR013102
- InterPro:   IPR018090
- InterPro:   IPR000053
- InterPro:   IPR017872
- Gene3D:   G3DSA:1.20.970.10
- Gene3D:   G3DSA:3.40.1030.10
- PANTHER:   PTHR10515
- PIRSF:   PIRSF000478
- SMART:   SM00941
- TIGRFAMs:   TIGR02644

Pfam domain/function: PF02885 Glycos_trans_3N; PF00591 Glycos_transf_3; PF07831 PYNP_C; SSF47648 Glyco_trans_3; SSF52418 Glyco_trans_3; SSF54680 PYNP_C

EC number: =2.4.2.2

Molecular weight: Translated: 46309; Mature: 46309

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS00647 THYMID_PHOSPHORYLASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMIDIIEKKRDGHTLTTEEINFFIGGYVKGDIPDYQASSLAMAIYFQDMNDDERAALTM
CCCHHHHHHCCCCCEEEHHHEEEEEECEEECCCCCCCCCCEEEEEEEECCCCCHHHEEEE
AMVNSGDMIDLSDIKGVKVDKHSTGGVGDTTTLVLAPLVAAVDVPVAKMSGRGLGHTGGT
EEECCCCEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCC
IDKLEAIDGFHVEIDEATFVKLVNENKVAVVGQSGNLTPADKKLYALRDVTGTVNSIPLI
HHHHHHCCCCEEEECCCEEEEEECCCEEEEEECCCCCCCCHHHEEEEHHCCCCCHHHHHH
ASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEALAHAMVRIGNNVGRNTMAIISDMN
HHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
QPLGRAIGNALELQEAIDTLKGQGPKDLTELVLTLGSQMVVLANKAETLEEARALLIEAI
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH
NSGAALEKFKTFIKNQGGDETVIDHPERLPQAQYQIEYKAKKSGYVTELVSNDIGVASMM
CCCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCEEEEEEEECCCCCHHHHHHCCCCHHHHH
LGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADH
HCCCCCCCCCCCCEEEEEEEECHHCCHHHCCCEEEEEECCCCCHHHHHHHHCCCEEEHHH
VVSPTLIHKIITE
HCCHHHHHHHHCC
>Mature Secondary Structure
MRMIDIIEKKRDGHTLTTEEINFFIGGYVKGDIPDYQASSLAMAIYFQDMNDDERAALTM
CCCHHHHHHCCCCCEEEHHHEEEEEECEEECCCCCCCCCCEEEEEEEECCCCCHHHEEEE
AMVNSGDMIDLSDIKGVKVDKHSTGGVGDTTTLVLAPLVAAVDVPVAKMSGRGLGHTGGT
EEECCCCEEECCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCC
IDKLEAIDGFHVEIDEATFVKLVNENKVAVVGQSGNLTPADKKLYALRDVTGTVNSIPLI
HHHHHHCCCCEEEECCCEEEEEECCCEEEEEECCCCCCCCHHHEEEEHHCCCCCHHHHHH
ASSIMSKKIAAGADAIVLDVKTGSGAFMKTLEDAEALAHAMVRIGNNVGRNTMAIISDMN
HHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
QPLGRAIGNALELQEAIDTLKGQGPKDLTELVLTLGSQMVVLANKAETLEEARALLIEAI
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHH
NSGAALEKFKTFIKNQGGDETVIDHPERLPQAQYQIEYKAKKSGYVTELVSNDIGVASMM
CCCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCEEEEEEEECCCCCHHHHHHCCCCHHHHH
LGAGRLTKEDDIDLAVGIVLNKKIGDKVEEGESLLTIHSNRQDVDDVVKKLDSSITIADH
HCCCCCCCCCCCCEEEEEEEECHHCCHHHCCCEEEEEECCCCCHHHHHHHHCCCEEEHHH
VVSPTLIHKIITE
HCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA