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The map label for this gene is ykoC [H]

Identifier: 151221155

GI number: 151221155

Start: 1047594

End: 1048415

Strand: Reverse

Name: ykoC [H]

Synonym: NWMN_0943

Alternate gene names: 151221155

Gene position: 1048415-1047594 (Counterclockwise)

Preceding gene: 151221156

Following gene: 151221144

Centisome position: 36.42

GC content: 31.39

Gene sequence:

>822_bases
GTGATGGTGATACGAATGTATGAGCAATGGAAAGTTCGGCAATCATTTGTTGATGATGTCAACATTATAACGAAACTATT
TCTTGGAATTATACTATTTTTCTTTATTATATTTGTGCATAATTTCGATTTTATGCTTTATATCACTATCTTAATGTTAG
TTTTCTTATTGATGTTTAATGGTACTCAGTTTAAAATTACAGCAATTTTTATAACTATAAGTATTGGCTTTGCATTACTC
TCTTCCCTGTTCATGATTTTATACGGGAATGGTAGCCATACAATTTTGAAATTCGGATTTATCCATATTACAACAGAAAG
TTTAGTTCGTGGTTTACATGTATCATTAAGAACCATTGCTATTTCATTTTTCGGTATCTTAATCGCACTTACATCTCAGG
TTGTCATGATATTTTATAGTTTAATGCAACATTTAAAGGTTAAATCAAAAGTTGCTTATGCATTCATGGCTGCCATTCGT
ATGATACCTTTAATGATTAGTTCTTTAATACAGCTTCGCAGATCTTTAAAAATGCGCTATCAGATGATAGACGCGGCAAA
TTATAGAGGGTTAAAGCGATTTAAGCATTTAATTATACCTCTATTAAGCCAAAATATTAGAAAGGCACATCAATTATCAG
TTGCGATGGAGTCGAAAGGATTTAGAGATGGTCCTCGTACTTACTATTACAACGTACCTTTCTCATATAAAGATATAATC
TTTATTATAGTTTTAATTGCCATTATTACTATGGCATATTATTGTTCAATCACCTTACCCATCACGGGCATAGATGATGT
TCGTCTTGGTCGTGTAGGTTAA

Upstream 100 bases:

>100_bases
AATTTGGGACAAAGTATTGTCATGGTTACACATGACGATGAAATAATTGAACGTTATCCATCAAGAAGACTTAAAATTTC
AGATGGTGCGTTACTAGATT

Downstream 100 bases:

>100_bases
ATTTTATCCATAATTGTATAGATACTAAATTAGAAATTCATTGTATAGAAAAAGAAAACCATTTATTCCATACTAAACAA
AAGAGGTGCCACAAACATGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MMVIRMYEQWKVRQSFVDDVNIITKLFLGIILFFFIIFVHNFDFMLYITILMLVFLLMFNGTQFKITAIFITISIGFALL
SSLFMILYGNGSHTILKFGFIHITTESLVRGLHVSLRTIAISFFGILIALTSQVVMIFYSLMQHLKVKSKVAYAFMAAIR
MIPLMISSLIQLRRSLKMRYQMIDAANYRGLKRFKHLIIPLLSQNIRKAHQLSVAMESKGFRDGPRTYYYNVPFSYKDII
FIIVLIAIITMAYYCSITLPITGIDDVRLGRVG

Sequences:

>Translated_273_residues
MMVIRMYEQWKVRQSFVDDVNIITKLFLGIILFFFIIFVHNFDFMLYITILMLVFLLMFNGTQFKITAIFITISIGFALL
SSLFMILYGNGSHTILKFGFIHITTESLVRGLHVSLRTIAISFFGILIALTSQVVMIFYSLMQHLKVKSKVAYAFMAAIR
MIPLMISSLIQLRRSLKMRYQMIDAANYRGLKRFKHLIIPLLSQNIRKAHQLSVAMESKGFRDGPRTYYYNVPFSYKDII
FIIVLIAIITMAYYCSITLPITGIDDVRLGRVG
>Mature_273_residues
MMVIRMYEQWKVRQSFVDDVNIITKLFLGIILFFFIIFVHNFDFMLYITILMLVFLLMFNGTQFKITAIFITISIGFALL
SSLFMILYGNGSHTILKFGFIHITTESLVRGLHVSLRTIAISFFGILIALTSQVVMIFYSLMQHLKVKSKVAYAFMAAIR
MIPLMISSLIQLRRSLKMRYQMIDAANYRGLKRFKHLIIPLLSQNIRKAHQLSVAMESKGFRDGPRTYYYNVPFSYKDII
FIIVLIAIITMAYYCSITLPITGIDDVRLGRVG

Specific function: Part of the ABC transporter complex YkoCDEF that could transport hydroxymethylpyrimidine (HMP) and/or thiamine. Could also transport other HMP-containing products. Probably responsible for the translocation of the substrate across the membrane (Probable)

COG id: COG0619

COG function: function code P; ABC-type cobalt transport system, permease component CbiQ and related transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiQ family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003339 [H]

Pfam domain/function: PF02361 CbiQ [H]

EC number: NA

Molecular weight: Translated: 31585; Mature: 31585

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMVIRMYEQWKVRQSFVDDVNIITKLFLGIILFFFIIFVHNFDFMLYITILMLVFLLMFN
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
GTQFKITAIFITISIGFALLSSLFMILYGNGSHTILKFGFIHITTESLVRGLHVSLRTIA
CCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHEEEHHHHHHHHHHHHHHHH
ISFFGILIALTSQVVMIFYSLMQHLKVKSKVAYAFMAAIRMIPLMISSLIQLRRSLKMRY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QMIDAANYRGLKRFKHLIIPLLSQNIRKAHQLSVAMESKGFRDGPRTYYYNVPFSYKDII
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH
FIIVLIAIITMAYYCSITLPITGIDDVRLGRVG
HHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCC
>Mature Secondary Structure
MMVIRMYEQWKVRQSFVDDVNIITKLFLGIILFFFIIFVHNFDFMLYITILMLVFLLMFN
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
GTQFKITAIFITISIGFALLSSLFMILYGNGSHTILKFGFIHITTESLVRGLHVSLRTIA
CCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHEEEHHHHHHHHHHHHHHHH
ISFFGILIALTSQVVMIFYSLMQHLKVKSKVAYAFMAAIRMIPLMISSLIQLRRSLKMRY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QMIDAANYRGLKRFKHLIIPLLSQNIRKAHQLSVAMESKGFRDGPRTYYYNVPFSYKDII
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHH
FIIVLIAIITMAYYCSITLPITGIDDVRLGRVG
HHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]