| Definition | Methanococcus aeolicus Nankai-3, complete genome. |
|---|---|
| Accession | NC_009635 |
| Length | 1,569,500 |
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The map label for this gene is hypF [H]
Identifier: 150401899
GI number: 150401899
Start: 1536280
End: 1538667
Strand: Reverse
Name: hypF [H]
Synonym: Maeo_1477
Alternate gene names: 150401899
Gene position: 1538667-1536280 (Counterclockwise)
Preceding gene: 150401900
Following gene: 150401896
Centisome position: 98.04
GC content: 30.19
Gene sequence:
>2388_bases ATGACACCAGTAAAAACAAAAAAAATAATTATTGAAGGAATTGTTCAAGGGGTGGGATTTAGACCTTTTGTTTATAGAAT TGCTAAAAAACATAATTTAAATGGTTTCGTAATAAATAAAGGTGGTTGTGTTGAAGTAATAATACAGGGAGCTCCGAAAA ATATAACTCAATTTATACAACATTTAAAAAATGAAAAACCAGAATTATCAAAAATAGATAAAATAGAGATAGAAGAAACA ATAACTACAACAATTTACACCGATTTTAAAATAAAAGAAAGCGAATCACAAAAGGAAATGGAAAAAGGAGAGAGCACAAT TCCCGCCGATGTAGCAATATGTGAAGAATGCCTTAAAGAAATGATGGATAAAAACAATAGACGATATAATTATCCATTTA CGGCATGCACAAACTGCGGGGCAAGATTTACAGTAATAAAACAAATTCCATATGATAGGGATAATACTTCAATGGATAAA TTTCCACTGTGCAAAAAATGTTTGGAGGAATACAAAAATCCAATGGATAGGAGATTTCATGCTCAGGCAACTTGTTGTAG TGAGTGCGGACCTACCGTATTTTTAACAGATAAGGACGGAAATATATTATATACAAATAATAATGCCATAGAGCAAACGG TAAAGCTATTAAAGGAAGGAAATATATTTGCAATTAAGGGAATTGGAGGGGCTCACCTTGTATGTGATGCCAACAATGAC AGTGCAGTATTGGAATTAAGGAAAAGATTAAACCGCCCAACTCAACCATTTGCAATTATGGCAAAACCAGAATATTTAAA ATTATTTGCAAACTATGATAATGAAGAAATAAACCTTTTTAAATCCCAAAAAAGACCAATTGTGGTGTTTGATAAAAACA AAAATTATGATAAATATATTTCAAAATTTGTAAGTGATTTGAACACTGTTGGAGCTATGGCACAATATTCCGGGATTCAC CATCTTTTATTTAATGAAACTGAGGCTATTGCCTATGTTATGACTTCGGCAAATCTTCCCGGGCTACCTATGGCAATAGA GAACGATAAAATAATAGATAGTTTAAAAAATATTGCCGATTATTTCTTACTTCACAATAGGGATATTATAAATCGTTGTG ATGATAGCGTATTAAAAAAAATAAACAACAGAATGATATTTTTAAGGCGGTCAAGAGGATTTGCACCAGAGCCCATTGTT ATTAACAATGATTTAATTAACAATGAAGATATTAAAAACAGAACCATATTATGTATGGGTGCAGAATTAAATTCTGTAGC ATCACTTGTAAAGGGAAATAAATTTTATTTAACCCAATATATAGGAAATACGGCAAAATATGAAACATACAACTATTTAG AAAATGCAATAAACAACATTTTAAAAATTACAGATACACAACCAAAAGACATTGACGCCATTGTGTGCGATTTGCATCCT TCTTTTAATTCCTCCAAATTAGCTATGGAATTGGGGCAAAAATACAATATAAAAGTACATAGGGCACAACACCACGAAGC CCATTGTTATTCGTTATTGGGAGATAATAATATTTTTGAACCTGCCACAATTATTGCAATTGATGGAGTGGGTTATGGAA CAGATGGAATTATTTGGGGCGGAGAGGTCTTTTCATATATTGATGGGATTATGGAAAGAATTGGACATTTTGAGGAACAA TATCAAGCTGGGGGAGACCTTGCCGCAAAACAGCCACTTAGGATGTTAATATCAATACTTTATAAAAAACTTGAAAAAGA GGAATTGATTAATTTTATTAAAAAATATAATTATTTTACAGAAAAAGAATTAAATATTATATTATTTCAGCTAAATAAAA AATTAAATGTAAATAATACAACTTCTTGCGGAAGAATACTTGATTCAGTTTCGGCTATGCTCTCAGTATGCCATGAAAGA ACCTACGATGGAGAATATGCCATTAAATTAGAATGTGTGGCAGAAAACTTTATAAAAAATTGTTCCGATGAAGAATATAA AAGATGTCTAGAAATGGTTAAACAGGATATAAAAATAACAAAAACGAAAGATGATGGAAAATATATATTAAATACAACTG ATTTGGTTTATAATTGCTATAAAATGCTATTAAATGGATTTGAAAAGGAATTTATAGCATATTATATTCATTTGGCAATT GCGGACGGACTTTCAGAAATTGCCATTAAAAACTCGGAGCTCCACAATATTAAATATATAGGTTTGACTGGTGGAGTTTC ATACAATAAAATTATATCTGAGAAAATAAGACAAAATGTAGAAAATAATGGATTTAAATTTTTATATCATAAAAATGTGC CAAATGGGGATGGAGGTATTTGTTTTGGTCAAGGTGTTTATTATTTATCAAGTAATAAAATAAGATAA
Upstream 100 bases:
>100_bases ACAAACTTTTCAAACAGGCCACATTCTGGATGGATATGTTCTCCCCCATTATTGCCAATTCATTTATATATATTTATTAA ATCATATTAATTGTGATATT
Downstream 100 bases:
>100_bases AATTTTTATTTTTTATTCTTTAAAATATAATTCTCTTCTATCAATACATTTAATAAAACATTTGTTAATATCTTCGCCAT TTCGTAATGGGGTTAAAACA
Product: (NiFe) hydrogenase maturation protein HypF
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF; [NiFe]-hydrogenase maturation factor hypF; Hydrogenase maturation protein hypF [H]
Number of amino acids: Translated: 795; Mature: 794
Protein sequence:
>795_residues MTPVKTKKIIIEGIVQGVGFRPFVYRIAKKHNLNGFVINKGGCVEVIIQGAPKNITQFIQHLKNEKPELSKIDKIEIEET ITTTIYTDFKIKESESQKEMEKGESTIPADVAICEECLKEMMDKNNRRYNYPFTACTNCGARFTVIKQIPYDRDNTSMDK FPLCKKCLEEYKNPMDRRFHAQATCCSECGPTVFLTDKDGNILYTNNNAIEQTVKLLKEGNIFAIKGIGGAHLVCDANND SAVLELRKRLNRPTQPFAIMAKPEYLKLFANYDNEEINLFKSQKRPIVVFDKNKNYDKYISKFVSDLNTVGAMAQYSGIH HLLFNETEAIAYVMTSANLPGLPMAIENDKIIDSLKNIADYFLLHNRDIINRCDDSVLKKINNRMIFLRRSRGFAPEPIV INNDLINNEDIKNRTILCMGAELNSVASLVKGNKFYLTQYIGNTAKYETYNYLENAINNILKITDTQPKDIDAIVCDLHP SFNSSKLAMELGQKYNIKVHRAQHHEAHCYSLLGDNNIFEPATIIAIDGVGYGTDGIIWGGEVFSYIDGIMERIGHFEEQ YQAGGDLAAKQPLRMLISILYKKLEKEELINFIKKYNYFTEKELNIILFQLNKKLNVNNTTSCGRILDSVSAMLSVCHER TYDGEYAIKLECVAENFIKNCSDEEYKRCLEMVKQDIKITKTKDDGKYILNTTDLVYNCYKMLLNGFEKEFIAYYIHLAI ADGLSEIAIKNSELHNIKYIGLTGGVSYNKIISEKIRQNVENNGFKFLYHKNVPNGDGGICFGQGVYYLSSNKIR
Sequences:
>Translated_795_residues MTPVKTKKIIIEGIVQGVGFRPFVYRIAKKHNLNGFVINKGGCVEVIIQGAPKNITQFIQHLKNEKPELSKIDKIEIEET ITTTIYTDFKIKESESQKEMEKGESTIPADVAICEECLKEMMDKNNRRYNYPFTACTNCGARFTVIKQIPYDRDNTSMDK FPLCKKCLEEYKNPMDRRFHAQATCCSECGPTVFLTDKDGNILYTNNNAIEQTVKLLKEGNIFAIKGIGGAHLVCDANND SAVLELRKRLNRPTQPFAIMAKPEYLKLFANYDNEEINLFKSQKRPIVVFDKNKNYDKYISKFVSDLNTVGAMAQYSGIH HLLFNETEAIAYVMTSANLPGLPMAIENDKIIDSLKNIADYFLLHNRDIINRCDDSVLKKINNRMIFLRRSRGFAPEPIV INNDLINNEDIKNRTILCMGAELNSVASLVKGNKFYLTQYIGNTAKYETYNYLENAINNILKITDTQPKDIDAIVCDLHP SFNSSKLAMELGQKYNIKVHRAQHHEAHCYSLLGDNNIFEPATIIAIDGVGYGTDGIIWGGEVFSYIDGIMERIGHFEEQ YQAGGDLAAKQPLRMLISILYKKLEKEELINFIKKYNYFTEKELNIILFQLNKKLNVNNTTSCGRILDSVSAMLSVCHER TYDGEYAIKLECVAENFIKNCSDEEYKRCLEMVKQDIKITKTKDDGKYILNTTDLVYNCYKMLLNGFEKEFIAYYIHLAI ADGLSEIAIKNSELHNIKYIGLTGGVSYNKIISEKIRQNVENNGFKFLYHKNVPNGDGGICFGQGVYYLSSNKIR >Mature_794_residues TPVKTKKIIIEGIVQGVGFRPFVYRIAKKHNLNGFVINKGGCVEVIIQGAPKNITQFIQHLKNEKPELSKIDKIEIEETI TTTIYTDFKIKESESQKEMEKGESTIPADVAICEECLKEMMDKNNRRYNYPFTACTNCGARFTVIKQIPYDRDNTSMDKF PLCKKCLEEYKNPMDRRFHAQATCCSECGPTVFLTDKDGNILYTNNNAIEQTVKLLKEGNIFAIKGIGGAHLVCDANNDS AVLELRKRLNRPTQPFAIMAKPEYLKLFANYDNEEINLFKSQKRPIVVFDKNKNYDKYISKFVSDLNTVGAMAQYSGIHH LLFNETEAIAYVMTSANLPGLPMAIENDKIIDSLKNIADYFLLHNRDIINRCDDSVLKKINNRMIFLRRSRGFAPEPIVI NNDLINNEDIKNRTILCMGAELNSVASLVKGNKFYLTQYIGNTAKYETYNYLENAINNILKITDTQPKDIDAIVCDLHPS FNSSKLAMELGQKYNIKVHRAQHHEAHCYSLLGDNNIFEPATIIAIDGVGYGTDGIIWGGEVFSYIDGIMERIGHFEEQY QAGGDLAAKQPLRMLISILYKKLEKEELINFIKKYNYFTEKELNIILFQLNKKLNVNNTTSCGRILDSVSAMLSVCHERT YDGEYAIKLECVAENFIKNCSDEEYKRCLEMVKQDIKITKTKDDGKYILNTTDLVYNCYKMLLNGFEKEFIAYYIHLAIA DGLSEIAIKNSELHNIKYIGLTGGVSYNKIISEKIRQNVENNGFKFLYHKNVPNGDGGICFGQGVYYLSSNKIR
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=790, Percent_Identity=32.4050632911392, Blast_Score=396, Evalue=1e-111,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 90606; Mature: 90475
Theoretical pI: Translated: 7.67; Mature: 7.67
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPVKTKKIIIEGIVQGVGFRPFVYRIAKKHNLNGFVINKGGCVEVIIQGAPKNITQFIQ CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCEEEEEEECCCHHHHHHHH HLKNEKPELSKIDKIEIEETITTTIYTDFKIKESESQKEMEKGESTIPADVAICEECLKE HHCCCCCCCCCCCCEEHHHEEEEEEEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHH MMDKNNRRYNYPFTACTNCGARFTVIKQIPYDRDNTSMDKFPLCKKCLEEYKNPMDRRFH HHHCCCCEECCCCHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHH AQATCCSECGPTVFLTDKDGNILYTNNNAIEQTVKLLKEGNIFAIKGIGGAHLVCDANND HHHHHHHHCCCEEEEEECCCCEEEECCHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCC SAVLELRKRLNRPTQPFAIMAKPEYLKLFANYDNEEINLFKSQKRPIVVFDKNKNYDKYI HHHHHHHHHHCCCCCCEEEEECCHHEEEEECCCCCCEEHHHCCCCCEEEEECCCCHHHHH SKFVSDLNTVGAMAQYSGIHHLLFNETEAIAYVMTSANLPGLPMAIENDKIIDSLKNIAD HHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEEECCCCCCCCEEECCCHHHHHHHHHHH YFLLHNRDIINRCDDSVLKKINNRMIFLRRSRGFAPEPIVINNDLINNEDIKNRTILCMG HHHHCCCHHHHHCCHHHHHHHCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCEEEEEC AELNSVASLVKGNKFYLTQYIGNTAKYETYNYLENAINNILKITDTQPKDIDAIVCDLHP CCHHHHHHHHCCCEEEEEEHHCCCCCCHHHHHHHHHHHHHEEECCCCCCCCCEEEEECCC SFNSSKLAMELGQKYNIKVHRAQHHEAHCYSLLGDNNIFEPATIIAIDGVGYGTDGIIWG CCCCCHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEC GEVFSYIDGIMERIGHFEEQYQAGGDLAAKQPLRMLISILYKKLEKEELINFIKKYNYFT HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCC EKELNIILFQLNKKLNVNNTTSCGRILDSVSAMLSVCHERTYDGEYAIKLECVAENFIKN CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHC CSDEEYKRCLEMVKQDIKITKTKDDGKYILNTTDLVYNCYKMLLNGFEKEFIAYYIHLAI CCHHHHHHHHHHHHHCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADGLSEIAIKNSELHNIKYIGLTGGVSYNKIISEKIRQNVENNGFKFLYHKNVPNGDGGI HCCHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCE CFGQGVYYLSSNKIR EECCCEEEEECCCCC >Mature Secondary Structure TPVKTKKIIIEGIVQGVGFRPFVYRIAKKHNLNGFVINKGGCVEVIIQGAPKNITQFIQ CCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCEEEEEEECCCHHHHHHHH HLKNEKPELSKIDKIEIEETITTTIYTDFKIKESESQKEMEKGESTIPADVAICEECLKE HHCCCCCCCCCCCCEEHHHEEEEEEEEEEEECCCHHHHHHHCCCCCCCHHHHHHHHHHHH MMDKNNRRYNYPFTACTNCGARFTVIKQIPYDRDNTSMDKFPLCKKCLEEYKNPMDRRFH HHHCCCCEECCCCHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHH AQATCCSECGPTVFLTDKDGNILYTNNNAIEQTVKLLKEGNIFAIKGIGGAHLVCDANND HHHHHHHHCCCEEEEEECCCCEEEECCHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCC SAVLELRKRLNRPTQPFAIMAKPEYLKLFANYDNEEINLFKSQKRPIVVFDKNKNYDKYI HHHHHHHHHHCCCCCCEEEEECCHHEEEEECCCCCCEEHHHCCCCCEEEEECCCCHHHHH SKFVSDLNTVGAMAQYSGIHHLLFNETEAIAYVMTSANLPGLPMAIENDKIIDSLKNIAD HHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEEECCCCCCCCEEECCCHHHHHHHHHHH YFLLHNRDIINRCDDSVLKKINNRMIFLRRSRGFAPEPIVINNDLINNEDIKNRTILCMG HHHHCCCHHHHHCCHHHHHHHCCCEEEEEECCCCCCCCEEECCCCCCCCCCCCCEEEEEC AELNSVASLVKGNKFYLTQYIGNTAKYETYNYLENAINNILKITDTQPKDIDAIVCDLHP CCHHHHHHHHCCCEEEEEEHHCCCCCCHHHHHHHHHHHHHEEECCCCCCCCCEEEEECCC SFNSSKLAMELGQKYNIKVHRAQHHEAHCYSLLGDNNIFEPATIIAIDGVGYGTDGIIWG CCCCCHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEEEC GEVFSYIDGIMERIGHFEEQYQAGGDLAAKQPLRMLISILYKKLEKEELINFIKKYNYFT HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCC EKELNIILFQLNKKLNVNNTTSCGRILDSVSAMLSVCHERTYDGEYAIKLECVAENFIKN CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHC CSDEEYKRCLEMVKQDIKITKTKDDGKYILNTTDLVYNCYKMLLNGFEKEFIAYYIHLAI CCHHHHHHHHHHHHHCCEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADGLSEIAIKNSELHNIKYIGLTGGVSYNKIISEKIRQNVENNGFKFLYHKNVPNGDGGI HCCHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCE CFGQGVYYLSSNKIR EECCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]