| Definition | Methanococcus aeolicus Nankai-3, complete genome. |
|---|---|
| Accession | NC_009635 |
| Length | 1,569,500 |
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The map label for this gene is nifD [H]
Identifier: 150401849
GI number: 150401849
Start: 1481814
End: 1483223
Strand: Reverse
Name: nifD [H]
Synonym: Maeo_1427
Alternate gene names: 150401849
Gene position: 1483223-1481814 (Counterclockwise)
Preceding gene: 150401850
Following gene: 150401848
Centisome position: 94.5
GC content: 31.63
Gene sequence:
>1410_bases ATGGAAAAAACACAAAATGCAGGGGATACCAATATAATAAGCGATATAAACGCCAATTCAACAAATAAAAATGTTAAAGG GCGAATCGATAGGATAGGCCACTGTATAACAAATGATAATAATACACTTCCAGCATGTGCTGAATTTACACAACCAGGAG ATTTTTCCGAACGGTCTTGCACATTTCATGGAAGTAAGATTATTATTAACAGCCATATAAAAAATGTAATCCATCTTATT CATTCTCCTGCAAGTTGTGCATATTATTCATGGGACTATCGACCCGATACATATTCATTCTGCTTCACAACAGACATTAA AGAAGAAGATGTAGTATTTGGTGGTGAAAAGAAGCTATACGATGCAATACTTAAAATATGCGAAGAATTTAACCCCGATG CCATATTTGTATATGAAACCTGTCAAACGGCATTAATTGGAGACGATATTTCTGCGGTTGTAAAGGAAGTAAAAAAGAAA TTAAAAAATACAAACCATAAAAATAAGGACACACCAATATTAGCATTTGAATGTGCTGGATTTAAAGGTAAAACCCAAAA TAAAGGGCATATGATAGCAAACAAAAAACTTTTTGAATTAATTGCCACAAAAGAAGTTGAGGAAGTGCTGGAACAACCCC CTACTCCATATGATGTAAATATAATTGGTGATTTTAGCACAGGGAGCTCCAACTCAATAGAGCAAATATTTAATAAAATG GGAGTTAGAGTATTATGTTCATTTACAGGAAATGCCACAATTGATAGAATTAGAATTATGGACAGTGCAAAATTAAATAT TGTACATTGTATGAAAAGTTCCATTCAATTTGCAAATATGATGGAAAAGGTTTATGAAGTGCCATATATTGTTTCAAATT TCTTTGGAATACAAAATTGCTGTGATGCTTTGGAAAATATTGGAAAAATATTGGACATCGATAAAAAAGTTGTGGATAAT ACCATTGATTATTATTTAAATAAAAATGAAAAAGAATTAGAATACTATAAAAAAGAATTAAAAGGGAAAAAAGTTTTCAT ATGTCATGGAGCCCAGAGGGCATTAAATTATATGGGTCCGACAATGGAAGAACTTGAAATGGAAGTAGTTGGAGTAGCAA CTTATTTTGCAAATAAAGAAAATTACGAAAAAATTGTAAAACAACTTCCAAAAGGTGCAGTAATTATCGATAATCCAAAT ACATACGAGCTTGAAAATGCCATAATAGACTGCAAACCCGACATATTTATCTCCGACAGTAAAACAAAGGAGTTAGTTCA TAAGTTAGGAATTCCATATATAAATGGCAGGGCTCCTTCCACAGTATATATAGGATTTGATGGATTTGTCAATTTTGCAA AAGATGTTTATGGTGCCATTAATTCCAACATATGGAAATTAGTAAAATAA
Upstream 100 bases:
>100_bases TTTTTTTACTATTGGCATTTTTTTACTATTATATAACTAACTTTAACAAACATGAAAATTTAAAATGAATATTTATTAAT TTATATAAGTGGTGGAGCAT
Downstream 100 bases:
>100_bases GATTATTATTAAAAAAATTAAACAATATTAATATTAATTAAAAAAATAAAAATGGAGGGATATTATCTCAAAAAAATCAT TAACAGTCAATCCTCCATAT
Product: nitrogenase
Products: NA
Alternate protein names: Dinitrogenase; Nitrogenase component I [H]
Number of amino acids: Translated: 469; Mature: 469
Protein sequence:
>469_residues MEKTQNAGDTNIISDINANSTNKNVKGRIDRIGHCITNDNNTLPACAEFTQPGDFSERSCTFHGSKIIINSHIKNVIHLI HSPASCAYYSWDYRPDTYSFCFTTDIKEEDVVFGGEKKLYDAILKICEEFNPDAIFVYETCQTALIGDDISAVVKEVKKK LKNTNHKNKDTPILAFECAGFKGKTQNKGHMIANKKLFELIATKEVEEVLEQPPTPYDVNIIGDFSTGSSNSIEQIFNKM GVRVLCSFTGNATIDRIRIMDSAKLNIVHCMKSSIQFANMMEKVYEVPYIVSNFFGIQNCCDALENIGKILDIDKKVVDN TIDYYLNKNEKELEYYKKELKGKKVFICHGAQRALNYMGPTMEELEMEVVGVATYFANKENYEKIVKQLPKGAVIIDNPN TYELENAIIDCKPDIFISDSKTKELVHKLGIPYINGRAPSTVYIGFDGFVNFAKDVYGAINSNIWKLVK
Sequences:
>Translated_469_residues MEKTQNAGDTNIISDINANSTNKNVKGRIDRIGHCITNDNNTLPACAEFTQPGDFSERSCTFHGSKIIINSHIKNVIHLI HSPASCAYYSWDYRPDTYSFCFTTDIKEEDVVFGGEKKLYDAILKICEEFNPDAIFVYETCQTALIGDDISAVVKEVKKK LKNTNHKNKDTPILAFECAGFKGKTQNKGHMIANKKLFELIATKEVEEVLEQPPTPYDVNIIGDFSTGSSNSIEQIFNKM GVRVLCSFTGNATIDRIRIMDSAKLNIVHCMKSSIQFANMMEKVYEVPYIVSNFFGIQNCCDALENIGKILDIDKKVVDN TIDYYLNKNEKELEYYKKELKGKKVFICHGAQRALNYMGPTMEELEMEVVGVATYFANKENYEKIVKQLPKGAVIIDNPN TYELENAIIDCKPDIFISDSKTKELVHKLGIPYINGRAPSTVYIGFDGFVNFAKDVYGAINSNIWKLVK >Mature_469_residues MEKTQNAGDTNIISDINANSTNKNVKGRIDRIGHCITNDNNTLPACAEFTQPGDFSERSCTFHGSKIIINSHIKNVIHLI HSPASCAYYSWDYRPDTYSFCFTTDIKEEDVVFGGEKKLYDAILKICEEFNPDAIFVYETCQTALIGDDISAVVKEVKKK LKNTNHKNKDTPILAFECAGFKGKTQNKGHMIANKKLFELIATKEVEEVLEQPPTPYDVNIIGDFSTGSSNSIEQIFNKM GVRVLCSFTGNATIDRIRIMDSAKLNIVHCMKSSIQFANMMEKVYEVPYIVSNFFGIQNCCDALENIGKILDIDKKVVDN TIDYYLNKNEKELEYYKKELKGKKVFICHGAQRALNYMGPTMEELEMEVVGVATYFANKENYEKIVKQLPKGAVIIDNPN TYELENAIIDCKPDIFISDSKTKELVHKLGIPYINGRAPSTVYIGFDGFVNFAKDVYGAINSNIWKLVK
Specific function: This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation [H]
COG id: COG2710
COG function: function code C; Nitrogenase molybdenum-iron protein, alpha and beta chains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nifD/nifK/nifE/nifN family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000510 - InterPro: IPR005974 - InterPro: IPR010143 - InterPro: IPR000318 [H]
Pfam domain/function: PF00148 Oxidored_nitro [H]
EC number: =1.18.6.1 [H]
Molecular weight: Translated: 52893; Mature: 52893
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKTQNAGDTNIISDINANSTNKNVKGRIDRIGHCITNDNNTLPACAEFTQPGDFSERSC CCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHEECCCCCCCCCHHHCCCCCCCCCCCE TFHGSKIIINSHIKNVIHLIHSPASCAYYSWDYRPDTYSFCFTTDIKEEDVVFGGEKKLY EECCCEEEEHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEECCCCCCEEECCCHHHH DAILKICEEFNPDAIFVYETCQTALIGDDISAVVKEVKKKLKNTNHKNKDTPILAFECAG HHHHHHHHHCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC FKGKTQNKGHMIANKKLFELIATKEVEEVLEQPPTPYDVNIIGDFSTGSSNSIEQIFNKM CCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHC GVRVLCSFTGNATIDRIRIMDSAKLNIVHCMKSSIQFANMMEKVYEVPYIVSNFFGIQNC CEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH CDALENIGKILDIDKKVVDNTIDYYLNKNEKELEYYKKELKGKKVFICHGAQRALNYMGP HHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHCCC TMEELEMEVVGVATYFANKENYEKIVKQLPKGAVIIDNPNTYELENAIIDCKPDIFISDS CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEECCCCCEECCCCEEECCCCEEECCC KTKELVHKLGIPYINGRAPSTVYIGFDGFVNFAKDVYGAINSNIWKLVK HHHHHHHHHCCCEECCCCCCEEEEECHHHHHHHHHHHHHHCCCHHHHCC >Mature Secondary Structure MEKTQNAGDTNIISDINANSTNKNVKGRIDRIGHCITNDNNTLPACAEFTQPGDFSERSC CCCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHEECCCCCCCCCHHHCCCCCCCCCCCE TFHGSKIIINSHIKNVIHLIHSPASCAYYSWDYRPDTYSFCFTTDIKEEDVVFGGEKKLY EECCCEEEEHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEECCCCCCEEECCCHHHH DAILKICEEFNPDAIFVYETCQTALIGDDISAVVKEVKKKLKNTNHKNKDTPILAFECAG HHHHHHHHHCCCCEEEEEECCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECC FKGKTQNKGHMIANKKLFELIATKEVEEVLEQPPTPYDVNIIGDFSTGSSNSIEQIFNKM CCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHHHHHHHC GVRVLCSFTGNATIDRIRIMDSAKLNIVHCMKSSIQFANMMEKVYEVPYIVSNFFGIQNC CEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH CDALENIGKILDIDKKVVDNTIDYYLNKNEKELEYYKKELKGKKVFICHGAQRALNYMGP HHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHCCC TMEELEMEVVGVATYFANKENYEKIVKQLPKGAVIIDNPNTYELENAIIDCKPDIFISDS CHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEECCCCCEECCCCEEECCCCEEECCC KTKELVHKLGIPYINGRAPSTVYIGFDGFVNFAKDVYGAINSNIWKLVK HHHHHHHHHCCCEECCCCCCEEEEECHHHHHHHHHHHHHHCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8575452 [H]