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The map label for this gene is ycfH [C]

Identifier: 150401701

GI number: 150401701

Start: 1339908

End: 1340720

Strand: Reverse

Name: ycfH [C]

Synonym: Maeo_1279

Alternate gene names: 150401701

Gene position: 1340720-1339908 (Counterclockwise)

Preceding gene: 150401702

Following gene: 150401700

Centisome position: 85.42

GC content: 25.58

Gene sequence:

>813_bases
ATGAATAATAATAATAATAATAATAATAACTACAATTATATAGATTCCCATTGTCATATTGAAGATAAATCATTTAATAA
AAACAGAGATGCCATTATTAAAAATGCAATGAATAATAATGTTAAAATTATAACAAGTGGTGCAAATCTTGGTGGATGCG
AGAGGGCTTTGAAAATTAAAAAAGATTATTCTGATATATATAATATTTATTTAACTTTGGGGTTTCACCCCTGCTACACT
AATGCAGATGATTATGTAATAAATAAAGTATATGATTTAATATTAAAAAACGAAAAAAATATTGTTGGAATAGGGGAAAT
TGGATTGGACATAAATACGGTGAATATTAATAATCCCGACCGCCAAAAAAATATATTTGTTAAATTTATAGATTTGGCAA
ATGAGTTAAACAAACCAATTGTAGTTCATGCAAGAGGAAGGGAAGAGGAATGTTATAACACCATAACGGGCAGTAGTAAA
TTTAATAATATAATATCCATGTTTCATTGTTATAGTGGAGATATTGAATTAGCAAATAAATTAATAAATGCAGGACATTA
TATTTCAATATCTACCTTGGTATGTTTCTCGGAGCTCCATGTAAATCTTGTAAAAAATCTTGAATTAGAAAATATTGTGG
TTGAAACCGATAGTCCATATTTATCCCCCATAAAGGGAGAAAAAAACCTACCAACAAATGTAATAAAGGTTGTAGAAAAA
ATATATGACATAAAAAAAGAGGAAGAAACATATAATTATGATGAAATTGTTAATATTATTTATAGAAATACAAAAATATT
ATTCAATATTTAA

Upstream 100 bases:

>100_bases
AAAGAAAAAGAAGAAGCCGTAAAAGAAACCATATTAAATGAATTAGATAACTGGGATTTTAGTGTGATTGAAAAAAAATA
AAATTTAAATGGGGCGAAAT

Downstream 100 bases:

>100_bases
AATATATAATAAAAAATATGATGAAAAATATAGGATAATTATTTGGTGATAATATGGAACGAACATTCATTGCTACTTTG
ACGGGCATTGTATCTGTTAA

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MNNNNNNNNNYNYIDSHCHIEDKSFNKNRDAIIKNAMNNNVKIITSGANLGGCERALKIKKDYSDIYNIYLTLGFHPCYT
NADDYVINKVYDLILKNEKNIVGIGEIGLDINTVNINNPDRQKNIFVKFIDLANELNKPIVVHARGREEECYNTITGSSK
FNNIISMFHCYSGDIELANKLINAGHYISISTLVCFSELHVNLVKNLELENIVVETDSPYLSPIKGEKNLPTNVIKVVEK
IYDIKKEEETYNYDEIVNIIYRNTKILFNI

Sequences:

>Translated_270_residues
MNNNNNNNNNYNYIDSHCHIEDKSFNKNRDAIIKNAMNNNVKIITSGANLGGCERALKIKKDYSDIYNIYLTLGFHPCYT
NADDYVINKVYDLILKNEKNIVGIGEIGLDINTVNINNPDRQKNIFVKFIDLANELNKPIVVHARGREEECYNTITGSSK
FNNIISMFHCYSGDIELANKLINAGHYISISTLVCFSELHVNLVKNLELENIVVETDSPYLSPIKGEKNLPTNVIKVVEK
IYDIKKEEETYNYDEIVNIIYRNTKILFNI
>Mature_270_residues
MNNNNNNNNNYNYIDSHCHIEDKSFNKNRDAIIKNAMNNNVKIITSGANLGGCERALKIKKDYSDIYNIYLTLGFHPCYT
NADDYVINKVYDLILKNEKNIVGIGEIGLDINTVNINNPDRQKNIFVKFIDLANELNKPIVVHARGREEECYNTITGSSK
FNNIISMFHCYSGDIELANKLINAGHYISISTLVCFSELHVNLVKNLELENIVVETDSPYLSPIKGEKNLPTNVIKVVEK
IYDIKKEEETYNYDEIVNIIYRNTKILFNI

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=270, Percent_Identity=27.4074074074074, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI110349734, Length=270, Percent_Identity=27.4074074074074, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI226061853, Length=278, Percent_Identity=27.3381294964029, Blast_Score=88, Evalue=6e-18,
Organism=Homo sapiens, GI226061614, Length=260, Percent_Identity=25.3846153846154, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI226061595, Length=241, Percent_Identity=28.2157676348548, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI14042943, Length=257, Percent_Identity=23.3463035019455, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI225903439, Length=255, Percent_Identity=23.1372549019608, Blast_Score=71, Evalue=9e-13,
Organism=Escherichia coli, GI1787342, Length=268, Percent_Identity=30.2238805970149, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI48994985, Length=261, Percent_Identity=26.4367816091954, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI87082439, Length=269, Percent_Identity=23.4200743494424, Blast_Score=100, Evalue=9e-23,
Organism=Caenorhabditis elegans, GI71980746, Length=271, Percent_Identity=28.7822878228782, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17559024, Length=241, Percent_Identity=25.7261410788382, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI17565396, Length=230, Percent_Identity=30, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24648690, Length=229, Percent_Identity=28.3842794759825, Blast_Score=94, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 30938; Mature: 30938

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNNNNNNNNYNYIDSHCHIEDKSFNKNRDAIIKNAMNNNVKIITSGANLGGCERALKIK
CCCCCCCCCCCEEEECEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
KDYSDIYNIYLTLGFHPCYTNADDYVINKVYDLILKNEKNIVGIGEIGLDINTVNINNPD
HHHHHHEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECEEEEEEECCCCC
RQKNIFVKFIDLANELNKPIVVHARGREEECYNTITGSSKFNNIISMFHCYSGDIELANK
CHHHHHHHEEEHHHHCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHH
LINAGHYISISTLVCFSELHVNLVKNLELENIVVETDSPYLSPIKGEKNLPTNVIKVVEK
HHCCCCEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
IYDIKKEEETYNYDEIVNIIYRNTKILFNI
HHHCCCCCCCCCHHHHHHHHHCCEEEEEEC
>Mature Secondary Structure
MNNNNNNNNNYNYIDSHCHIEDKSFNKNRDAIIKNAMNNNVKIITSGANLGGCERALKIK
CCCCCCCCCCCEEEECEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH
KDYSDIYNIYLTLGFHPCYTNADDYVINKVYDLILKNEKNIVGIGEIGLDINTVNINNPD
HHHHHHEEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECEEEEEEECCCCC
RQKNIFVKFIDLANELNKPIVVHARGREEECYNTITGSSKFNNIISMFHCYSGDIELANK
CHHHHHHHEEEHHHHCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHH
LINAGHYISISTLVCFSELHVNLVKNLELENIVVETDSPYLSPIKGEKNLPTNVIKVVEK
HHCCCCEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
IYDIKKEEETYNYDEIVNIIYRNTKILFNI
HHHCCCCCCCCCHHHHHHHHHCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]