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The map label for this gene is xerD [C]

Identifier: 150401647

GI number: 150401647

Start: 1294201

End: 1295175

Strand: Reverse

Name: xerD [C]

Synonym: Maeo_1225

Alternate gene names: 150401647

Gene position: 1295175-1294201 (Counterclockwise)

Preceding gene: 150401648

Following gene: 150401646

Centisome position: 82.52

GC content: 32.51

Gene sequence:

>975_bases
ATGCAGGACTTCGAGGAGCTCCTCCTCATTAAAGAAGCAGATAAAACAAAACCATGGGTAGATAAATTCACAGAAATTAG
AAAATTTGCAAATATTAAAGAAATTACATTGAAGAATGATATAATACGATTAAAAGTGTTTCTCAATTACTGCTTTAACA
CTTTGGAAAAAGAGCCAGATGAATTAGAATTCAATGACTTTATAATGTTCTTCAAATACTTAAATGAAGAAAGAAACATC
TCCATAAATACACAAGACCATTATTACAAGTTCCTATCTGTGTTCTATAAAGTGATGTTCTTAAAAAACTCATCAGAATA
TGTAAAGTTTAAAGAATACTGCAAAGAGCTGGGGAAATTCAAACGGTTCGAAGTGGAACACTTCGACGAGCTAACCTCCG
AGGAAGTAAATGAAATTATAAAACAAATACTAAATTCCAATAGTGCAACAAAGGTAAGGGATGCACTAATAATAAGATTA
ACATATGACACGGGAGCAAGGATAGGAGAGATATTAAACTTAAAGCTCAAAGACTGCGACTTCCAAAAGGGAATATTCAA
ATTCAGAAACACAAAGGGCAGAGAAGTAAGATTAACAGTATGTGCCTATGACACTTTGAAGGCATTAAAACATTACATAG
ACTATTATATGAAATCAAAAAAGAGCAACGACTATTTATTTCAAAATAAACATAATGGCAAAGTTGGTGATTATTGGATT
GGGAAGGTATTTAAGAGGACCGTAAATAAGTTAGTAGGTAGGGGGACTCTTCCAAAAAACAAACGAATAACACTACATTC
CCTTAGACACGGAAGGGTGGTAGATTTGTTAAATAAGGGCTATGGTTTGGATATTGTTGGAGATTATGTAGGACACAAGG
ATATAAGAACTACTATGATTTATGCACACTCCAATAGTAGAAAAAAGAAATTATTAAAAGAAATTCAGAAAGACTTAGAT
AAGGGGACTATGTAA

Upstream 100 bases:

>100_bases
CATCAAAACCCTACCGTTTTGTGTCATAATATGGTTAAAATTAAAATTTCAGTTTAGAATATTCATATTTACTTACTAAA
ATGCTAACAGGTGTGGAAAA

Downstream 100 bases:

>100_bases
GGTAGAAGGACTAAAATTTTAAAAAAAATAAATATAAAAAAAGACTAAATAACTCTTAAAATCGTTAAAAAAGTAATGGG
GCCGGTGCCGAGAATCGAAC

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MQDFEELLLIKEADKTKPWVDKFTEIRKFANIKEITLKNDIIRLKVFLNYCFNTLEKEPDELEFNDFIMFFKYLNEERNI
SINTQDHYYKFLSVFYKVMFLKNSSEYVKFKEYCKELGKFKRFEVEHFDELTSEEVNEIIKQILNSNSATKVRDALIIRL
TYDTGARIGEILNLKLKDCDFQKGIFKFRNTKGREVRLTVCAYDTLKALKHYIDYYMKSKKSNDYLFQNKHNGKVGDYWI
GKVFKRTVNKLVGRGTLPKNKRITLHSLRHGRVVDLLNKGYGLDIVGDYVGHKDIRTTMIYAHSNSRKKKLLKEIQKDLD
KGTM

Sequences:

>Translated_324_residues
MQDFEELLLIKEADKTKPWVDKFTEIRKFANIKEITLKNDIIRLKVFLNYCFNTLEKEPDELEFNDFIMFFKYLNEERNI
SINTQDHYYKFLSVFYKVMFLKNSSEYVKFKEYCKELGKFKRFEVEHFDELTSEEVNEIIKQILNSNSATKVRDALIIRL
TYDTGARIGEILNLKLKDCDFQKGIFKFRNTKGREVRLTVCAYDTLKALKHYIDYYMKSKKSNDYLFQNKHNGKVGDYWI
GKVFKRTVNKLVGRGTLPKNKRITLHSLRHGRVVDLLNKGYGLDIVGDYVGHKDIRTTMIYAHSNSRKKKLLKEIQKDLD
KGTM
>Mature_324_residues
MQDFEELLLIKEADKTKPWVDKFTEIRKFANIKEITLKNDIIRLKVFLNYCFNTLEKEPDELEFNDFIMFFKYLNEERNI
SINTQDHYYKFLSVFYKVMFLKNSSEYVKFKEYCKELGKFKRFEVEHFDELTSEEVNEIIKQILNSNSATKVRDALIIRL
TYDTGARIGEILNLKLKDCDFQKGIFKFRNTKGREVRLTVCAYDTLKALKHYIDYYMKSKKSNDYLFQNKHNGKVGDYWI
GKVFKRTVNKLVGRGTLPKNKRITLHSLRHGRVVDLLNKGYGLDIVGDYVGHKDIRTTMIYAHSNSRKKKLLKEIQKDLD
KGTM

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 38514; Mature: 38514

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDFEELLLIKEADKTKPWVDKFTEIRKFANIKEITLKNDIIRLKVFLNYCFNTLEKEPD
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHEEHHHHHHHHHHHHHHHHHHHCCCCC
ELEFNDFIMFFKYLNEERNISINTQDHYYKFLSVFYKVMFLKNSSEYVKFKEYCKELGKF
CCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
KRFEVEHFDELTSEEVNEIIKQILNSNSATKVRDALIIRLTYDTGARIGEILNLKLKDCD
HHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCHHHHHHCCEECCCC
FQKGIFKFRNTKGREVRLTVCAYDTLKALKHYIDYYMKSKKSNDYLFQNKHNGKVGDYWI
HHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHH
GKVFKRTVNKLVGRGTLPKNKRITLHSLRHGRVVDLLNKGYGLDIVGDYVGHKDIRTTMI
HHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCEEHHHHCCCCCCEEEEE
YAHSNSRKKKLLKEIQKDLDKGTM
EEECCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQDFEELLLIKEADKTKPWVDKFTEIRKFANIKEITLKNDIIRLKVFLNYCFNTLEKEPD
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHEEHHHHHHHHHHHHHHHHHHHCCCCC
ELEFNDFIMFFKYLNEERNISINTQDHYYKFLSVFYKVMFLKNSSEYVKFKEYCKELGKF
CCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
KRFEVEHFDELTSEEVNEIIKQILNSNSATKVRDALIIRLTYDTGARIGEILNLKLKDCD
HHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCHHHHHHCCEECCCC
FQKGIFKFRNTKGREVRLTVCAYDTLKALKHYIDYYMKSKKSNDYLFQNKHNGKVGDYWI
HHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHH
GKVFKRTVNKLVGRGTLPKNKRITLHSLRHGRVVDLLNKGYGLDIVGDYVGHKDIRTTMI
HHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCEEHHHHCCCCCCEEEEE
YAHSNSRKKKLLKEIQKDLDKGTM
EEECCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]