| Definition | Methanococcus aeolicus Nankai-3, complete genome. |
|---|---|
| Accession | NC_009635 |
| Length | 1,569,500 |
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The map label for this gene is comC [H]
Identifier: 150401439
GI number: 150401439
Start: 1041419
End: 1042456
Strand: Direct
Name: comC [H]
Synonym: Maeo_1015
Alternate gene names: 150401439
Gene position: 1041419-1042456 (Clockwise)
Preceding gene: 150401438
Following gene: 150401440
Centisome position: 66.35
GC content: 34.59
Gene sequence:
>1038_bases ATGAAAATTACAATAGATAATAAAAAGAAATTAATTAAGGACATATTAATGAAGTATGGCATAAATGAAAAAGATGCAGA AACTACGGCGAAGATATATGTTGAAGCTGATTTGAAAGGGTTTTCATCCCATGGTACGGGTAGATTCCCGCAAACTGTCG TAGGTCTTGAAAATGGAAATATAAATCCAAATCCAAATATTTCATTAATAAAAGAAAGTCCAGCAACAGCAACAGTTGAT GGGGATATGGGTCTTGGGTATGTAATAGGAGAATATGCTATGAATTTAGCAATTGAAAAGGCAAAAAATATTGGAATAGG TGCAGTAGCTACTGTTAATGCAAATCATTTTGGAATTACCGGATATTATTCAGAAATGGCACTAAACCATGATTTAATAG GGATAGTGATAACCAATACAGAACCAGCCATGGCCCCATTTGGAGGGACTGAAAAAATATTGGGAACAAACCCAATAGCA ATAGCAATTAAAGGAAAGAAATATTCGTATTCTCTTGATATGGCTACTGCATCACTTGCAAGAGGAAAACTGCTTGAAGC CGTGAGACTTGGAAAAGAAATTCCAGAGGGGTGCGTAGTAGATAAAGAAGGAAATATAACCACAGACCCTGCTAAGGGAT TAGAAGGATGTATATTGCCATTTGGGGGTCCAAAAGGTTATGGACTTGCACTTGCCATTGAAATTCTTTCGGCATTGGGC GGTGCTGAAATGGGAACCAATGTTAAAGGAACTGCCAATCCATTAGATAAATGCACAAAAGGAGACTTTTTCGTAGCCAT AAATCCAGAATTTTTTGGAGATAAGGAAGTATTTATGGAAAAAGTAGATGCCCTAATAGAAGAATTGAAAAACTCAAAAC CGGCGGAAGGATTTTCCATATTAATCCCCGGAGAAATTGAAAAAATGAACTCTGAAAAAAATAAATCAGGTTTTGAAATT GATACGGTTTTATATAACAAATTAAAAGATATTTGTGATAAAAAAGAGATAGATTTAAATGAATATATGATTAAGTAA
Upstream 100 bases:
>100_bases ATCCTCCGTTATATGATTGGCACCTATAATCTAGTCAATCTTCGGACTTTTGTCATAAATATATTGGTAAAATAAATTTA ATACAGTGAGAGGTGAATCA
Downstream 100 bases:
>100_bases TATATCTATGTAATTATACCCTGTAATTATACCATATCATGTTTTATATTGTGGTGTGTTCAAAACTATTATTGTAATAA AATACCACAACTAATTACGC
Product: (R)-2-hydroxyacid dehydrogenase
Products: NA
Alternate protein names: (R)-2-hydroxyacid dehydrogenase; (R)-sulfolactate dehydrogenase [H]
Number of amino acids: Translated: 345; Mature: 345
Protein sequence:
>345_residues MKITIDNKKKLIKDILMKYGINEKDAETTAKIYVEADLKGFSSHGTGRFPQTVVGLENGNINPNPNISLIKESPATATVD GDMGLGYVIGEYAMNLAIEKAKNIGIGAVATVNANHFGITGYYSEMALNHDLIGIVITNTEPAMAPFGGTEKILGTNPIA IAIKGKKYSYSLDMATASLARGKLLEAVRLGKEIPEGCVVDKEGNITTDPAKGLEGCILPFGGPKGYGLALAIEILSALG GAEMGTNVKGTANPLDKCTKGDFFVAINPEFFGDKEVFMEKVDALIEELKNSKPAEGFSILIPGEIEKMNSEKNKSGFEI DTVLYNKLKDICDKKEIDLNEYMIK
Sequences:
>Translated_345_residues MKITIDNKKKLIKDILMKYGINEKDAETTAKIYVEADLKGFSSHGTGRFPQTVVGLENGNINPNPNISLIKESPATATVD GDMGLGYVIGEYAMNLAIEKAKNIGIGAVATVNANHFGITGYYSEMALNHDLIGIVITNTEPAMAPFGGTEKILGTNPIA IAIKGKKYSYSLDMATASLARGKLLEAVRLGKEIPEGCVVDKEGNITTDPAKGLEGCILPFGGPKGYGLALAIEILSALG GAEMGTNVKGTANPLDKCTKGDFFVAINPEFFGDKEVFMEKVDALIEELKNSKPAEGFSILIPGEIEKMNSEKNKSGFEI DTVLYNKLKDICDKKEIDLNEYMIK >Mature_345_residues MKITIDNKKKLIKDILMKYGINEKDAETTAKIYVEADLKGFSSHGTGRFPQTVVGLENGNINPNPNISLIKESPATATVD GDMGLGYVIGEYAMNLAIEKAKNIGIGAVATVNANHFGITGYYSEMALNHDLIGIVITNTEPAMAPFGGTEKILGTNPIA IAIKGKKYSYSLDMATASLARGKLLEAVRLGKEIPEGCVVDKEGNITTDPAKGLEGCILPFGGPKGYGLALAIEILSALG GAEMGTNVKGTANPLDKCTKGDFFVAINPEFFGDKEVFMEKVDALIEELKNSKPAEGFSILIPGEIEKMNSEKNKSGFEI DTVLYNKLKDICDKKEIDLNEYMIK
Specific function: Catalyzes the reduction of sulfopyruvate to (R)- sulfolactate much more efficiently than the reverse reaction. Also catalyzes the reduction of oxaloacetate, alpha-ketoglutarate, and to a much lower extent, KHTCA, but not pyruvate. Involved in the biosynth
COG id: COG2055
COG function: function code C; Malate/L-lactate dehydrogenases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the LDH2/MDH2 oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1786727, Length=333, Percent_Identity=33.3333333333333, Blast_Score=171, Evalue=8e-44, Organism=Escherichia coli, GI1787020, Length=348, Percent_Identity=33.0459770114943, Blast_Score=163, Evalue=1e-41, Organism=Escherichia coli, GI1790000, Length=337, Percent_Identity=29.673590504451, Blast_Score=137, Evalue=9e-34, Organism=Caenorhabditis elegans, GI17507179, Length=350, Percent_Identity=33.1428571428571, Blast_Score=165, Evalue=2e-41, Organism=Caenorhabditis elegans, GI17536633, Length=317, Percent_Identity=34.384858044164, Blast_Score=162, Evalue=2e-40, Organism=Drosophila melanogaster, GI24667904, Length=351, Percent_Identity=34.1880341880342, Blast_Score=178, Evalue=4e-45, Organism=Drosophila melanogaster, GI24667908, Length=351, Percent_Identity=34.1880341880342, Blast_Score=178, Evalue=6e-45, Organism=Drosophila melanogaster, GI45553211, Length=351, Percent_Identity=34.1880341880342, Blast_Score=178, Evalue=6e-45, Organism=Drosophila melanogaster, GI24667912, Length=351, Percent_Identity=34.1880341880342, Blast_Score=178, Evalue=6e-45, Organism=Drosophila melanogaster, GI24658010, Length=337, Percent_Identity=30.2670623145401, Blast_Score=163, Evalue=2e-40, Organism=Drosophila melanogaster, GI24648360, Length=343, Percent_Identity=27.1137026239067, Blast_Score=132, Evalue=4e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003767 [H]
Pfam domain/function: PF02615 Ldh_2 [H]
EC number: =1.1.1.272 [H]
Molecular weight: Translated: 37053; Mature: 37053
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKITIDNKKKLIKDILMKYGINEKDAETTAKIYVEADLKGFSSHGTGRFPQTVVGLENGN CEEEECCHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEECCCC INPNPNISLIKESPATATVDGDMGLGYVIGEYAMNLAIEKAKNIGIGAVATVNANHFGIT CCCCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEE GYYSEMALNHDLIGIVITNTEPAMAPFGGTEKILGTNPIAIAIKGKKYSYSLDMATASLA EEHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEHHHHHHHH RGKLLEAVRLGKEIPEGCVVDKEGNITTDPAKGLEGCILPFGGPKGYGLALAIEILSALG HHHHHHHHHHHHCCCCCCEEECCCCEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHC GAEMGTNVKGTANPLDKCTKGDFFVAINPEFFGDKEVFMEKVDALIEELKNSKPAEGFSI CCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEE LIPGEIEKMNSEKNKSGFEIDTVLYNKLKDICDKKEIDLNEYMIK EECCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCC >Mature Secondary Structure MKITIDNKKKLIKDILMKYGINEKDAETTAKIYVEADLKGFSSHGTGRFPQTVVGLENGN CEEEECCHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEECCCC INPNPNISLIKESPATATVDGDMGLGYVIGEYAMNLAIEKAKNIGIGAVATVNANHFGIT CCCCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEE GYYSEMALNHDLIGIVITNTEPAMAPFGGTEKILGTNPIAIAIKGKKYSYSLDMATASLA EEHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEHHHHHHHH RGKLLEAVRLGKEIPEGCVVDKEGNITTDPAKGLEGCILPFGGPKGYGLALAIEILSALG HHHHHHHHHHHHCCCCCCEEECCCCEECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHC GAEMGTNVKGTANPLDKCTKGDFFVAINPEFFGDKEVFMEKVDALIEELKNSKPAEGFSI CCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEE LIPGEIEKMNSEKNKSGFEIDTVLYNKLKDICDKKEIDLNEYMIK EECCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087; 10850983 [H]