Click here to switch to the map view.

The map label for this gene is rpl39e

Identifier: 150401424

GI number: 150401424

Start: 1024127

End: 1024282

Strand: Direct

Name: rpl39e

Synonym: Maeo_1000

Alternate gene names: 150401424

Gene position: 1024127-1024282 (Clockwise)

Preceding gene: 150401423

Following gene: 150401425

Centisome position: 65.25

GC content: 32.05

Gene sequence:

>156_bases
ATGTCATCAATCAAACCAGCTGCTAAAAAATTAAGATTAGCTAAGGCAGGAAAACAGAACAGAAGAGTTCCTATGTTTGT
AATTGCAAAAACAGGCGGAAAAGTTAGAACCCATACAAAAATGAGAAATTGGAGAAGAAATACACTTAAAAAATAA

Upstream 100 bases:

>100_bases
GATTATTTTCCTAAACATATTCAATCGAGAGTTATGGGCCTTAAAAACCCATCTTCATTTAATACCAAATAAAATGATAA
AAATAAAAAGGTGAGTATTA

Downstream 100 bases:

>100_bases
ATATAATAAATAATTTTTCTTTTTTTTAACATAAATAAAATAAGTGTTGAATTTTTTAAAATATATATTTAATTTATATT
TTTTTATTACTAATTTTTTT

Product: ribosomal protein L39e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 51; Mature: 50

Protein sequence:

>51_residues
MSSIKPAAKKLRLAKAGKQNRRVPMFVIAKTGGKVRTHTKMRNWRRNTLKK

Sequences:

>Translated_51_residues
MSSIKPAAKKLRLAKAGKQNRRVPMFVIAKTGGKVRTHTKMRNWRRNTLKK
>Mature_50_residues
SSIKPAAKKLRLAKAGKQNRRVPMFVIAKTGGKVRTHTKMRNWRRNTLKK

Specific function: Unknown

COG id: COG2167

COG function: function code J; Ribosomal protein L39E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L39e family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL39_META3 (A6UVQ6)

Other databases:

- EMBL:   CP000743
- RefSeq:   YP_001325190.1
- ProteinModelPortal:   A6UVQ6
- SMR:   A6UVQ6
- STRING:   A6UVQ6
- GeneID:   5326843
- GenomeReviews:   CP000743_GR
- KEGG:   mae:Maeo_1000
- eggNOG:   arNOG13954
- HOGENOM:   HBG727906
- OMA:   RNKPLAR
- BioCyc:   MAEO419665:MAEO_1000-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00629
- InterPro:   IPR000077
- InterPro:   IPR020083
- Gene3D:   G3DSA:1.10.1620.10
- PANTHER:   PTHR19970

Pfam domain/function: PF00832 Ribosomal_L39; SSF48662 Ribosomal_L39

EC number: NA

Molecular weight: Translated: 5890; Mature: 5759

Theoretical pI: Translated: 13.29; Mature: 13.29

Prosite motif: PS00051 RIBOSOMAL_L39E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSIKPAAKKLRLAKAGKQNRRVPMFVIAKTGGKVRTHTKMRNWRRNTLKK
CCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSIKPAAKKLRLAKAGKQNRRVPMFVIAKTGGKVRTHTKMRNWRRNTLKK
CCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA