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The map label for this gene is ydcM [C]

Identifier: 150400891

GI number: 150400891

Start: 479822

End: 481027

Strand: Direct

Name: ydcM [C]

Synonym: Maeo_0459

Alternate gene names: 150400891

Gene position: 479822-481027 (Clockwise)

Preceding gene: 150400890

Following gene: 150400892

Centisome position: 30.57

GC content: 32.92

Gene sequence:

>1206_bases
ATGATGAGAACTTATAAGTTTAGGATTTATCCCTCTAAGAGACTCCAAGAAACAATAGAAGAGCATCTAAACATTTGTAG
ATACCTCTATAACTATCTTTTGGAACAAAAAACTAAAAATCCGAAACTAAACAAAGGAGATACCCAAAAACTAATAACAG
AGCATAAAAAGGAAAATCCTGAACTTAAAAAAGTCCATTCCAAAGTCCTTCAAATTATAAACAATAAACTTTGGGGCAGT
CTCAAAGCATTAGGAAAACTAAAACAGAATGGGCATAAAGTAGGTAGATTAAGATTCAAATCATCTAAAAATCACTATAA
AACGATAGAATACAATCAATCGGGTTTCAAGGTTGATTATAAAACCAAAAGACTCAAACTGTCCAAGATTGGAGAAATTC
ATATAAAACTACATAGAAAAATCAAAGGAGTAATTAAAGGAATAATTATAAAAAAAGAACCAACTGGTAAGTGGTTTGCC
TTCTTTCAAGTGGAAGAAGAACCTAAACCACTACCTAAAACCAATAAGGTTGTAGGTATAGATTTAGGAATCGATGGTTA
TGCCATCGATTCAGAGGGGAACAAATTTGAAAATCCAAAGTTTATTGCCAAAACTTTGGGTAAAATAAAAAAAGTCCAAA
AGAACCTATCTAAAAAGGTTAGGGGTTCTAATAACTACAAAAAGACCAAATTAAAACTTATCAAGGTTTATGATAAACTA
AACAATCAGAAAAATGATTTTCTACATAAATTATCAAGATATTACATAAACAATTATGATAAAATAGTTATAGAGGACTT
AAACATTAAGTCCATGATTGAAAACAAAAAAGGTCAGAAAACTCTAAACCGCCATATTCTTGACGGTTCTTGGAAAAAAT
TCATAAACTTACTTCTCTATAAGGCGGAGGGTGCTGATAGAGAAGTAATACTTATAAATCCTGCATATACTTCTAAAAAG
TGTTCCAATTGCGGTTGTGTAGTGGATAGTTTAAAATTATCTAATAGACTCTTTTTCTGTCCAAACTGCGGTTGGAATAT
TGATAGGGATTACAATGCGTCCCTAAATATATTAAAGTCAGGGCTTGGAGAGTCCGTTGTGCCTGCGGAGGGGAGACCTC
TACTCAGAGTTATACCTTATATAAAGGTAATCTCTGGGCAAGTATCCCCTATGAGTCAGGAAGCCCCTTCCGTAAGGGAG
GGGTAA

Upstream 100 bases:

>100_bases
GCAAATATTATTTAGCTAAATACAGAAGAAATATATGGATATAAATGATAATATACTAAGTTTTCTTAAACATGTTGATG
AACAATGGTGTAAATAATAT

Downstream 100 bases:

>100_bases
TTCACTATACAACAATGAATAATTAATAACTAATTTATATTTATCTATAATTTATATTAATTTACGGTGATTTTTTTGAA
TTCTATAAATGTATTATCCA

Product: IS605 family transposase OrfB

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MMRTYKFRIYPSKRLQETIEEHLNICRYLYNYLLEQKTKNPKLNKGDTQKLITEHKKENPELKKVHSKVLQIINNKLWGS
LKALGKLKQNGHKVGRLRFKSSKNHYKTIEYNQSGFKVDYKTKRLKLSKIGEIHIKLHRKIKGVIKGIIIKKEPTGKWFA
FFQVEEEPKPLPKTNKVVGIDLGIDGYAIDSEGNKFENPKFIAKTLGKIKKVQKNLSKKVRGSNNYKKTKLKLIKVYDKL
NNQKNDFLHKLSRYYINNYDKIVIEDLNIKSMIENKKGQKTLNRHILDGSWKKFINLLLYKAEGADREVILINPAYTSKK
CSNCGCVVDSLKLSNRLFFCPNCGWNIDRDYNASLNILKSGLGESVVPAEGRPLLRVIPYIKVISGQVSPMSQEAPSVRE
G

Sequences:

>Translated_401_residues
MMRTYKFRIYPSKRLQETIEEHLNICRYLYNYLLEQKTKNPKLNKGDTQKLITEHKKENPELKKVHSKVLQIINNKLWGS
LKALGKLKQNGHKVGRLRFKSSKNHYKTIEYNQSGFKVDYKTKRLKLSKIGEIHIKLHRKIKGVIKGIIIKKEPTGKWFA
FFQVEEEPKPLPKTNKVVGIDLGIDGYAIDSEGNKFENPKFIAKTLGKIKKVQKNLSKKVRGSNNYKKTKLKLIKVYDKL
NNQKNDFLHKLSRYYINNYDKIVIEDLNIKSMIENKKGQKTLNRHILDGSWKKFINLLLYKAEGADREVILINPAYTSKK
CSNCGCVVDSLKLSNRLFFCPNCGWNIDRDYNASLNILKSGLGESVVPAEGRPLLRVIPYIKVISGQVSPMSQEAPSVRE
G
>Mature_401_residues
MMRTYKFRIYPSKRLQETIEEHLNICRYLYNYLLEQKTKNPKLNKGDTQKLITEHKKENPELKKVHSKVLQIINNKLWGS
LKALGKLKQNGHKVGRLRFKSSKNHYKTIEYNQSGFKVDYKTKRLKLSKIGEIHIKLHRKIKGVIKGIIIKKEPTGKWFA
FFQVEEEPKPLPKTNKVVGIDLGIDGYAIDSEGNKFENPKFIAKTLGKIKKVQKNLSKKVRGSNNYKKTKLKLIKVYDKL
NNQKNDFLHKLSRYYINNYDKIVIEDLNIKSMIENKKGQKTLNRHILDGSWKKFINLLLYKAEGADREVILINPAYTSKK
CSNCGCVVDSLKLSNRLFFCPNCGWNIDRDYNASLNILKSGLGESVVPAEGRPLLRVIPYIKVISGQVSPMSQEAPSVRE
G

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=375, Percent_Identity=30.9333333333333, Blast_Score=159, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 46338; Mature: 46338

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRTYKFRIYPSKRLQETIEEHLNICRYLYNYLLEQKTKNPKLNKGDTQKLITEHKKENP
CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
ELKKVHSKVLQIINNKLWGSLKALGKLKQNGHKVGRLRFKSSKNHYKTIEYNQSGFKVDY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCEEEC
KTKRLKLSKIGEIHIKLHRKIKGVIKGIIIKKEPTGKWFAFFQVEEEPKPLPKTNKVVGI
HHHEEEHHHCCHHHHHHHHHHHHHHHHEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEE
DLGIDGYAIDSEGNKFENPKFIAKTLGKIKKVQKNLSKKVRGSNNYKKTKLKLIKVYDKL
EECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
NNQKNDFLHKLSRYYINNYDKIVIEDLNIKSMIENKKGQKTLNRHILDGSWKKFINLLLY
CCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHEE
KAEGADREVILINPAYTSKKCSNCGCVVDSLKLSNRLFFCPNCGWNIDRDYNASLNILKS
ECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHH
GLGESVVPAEGRPLLRVIPYIKVISGQVSPMSQEAPSVREG
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMRTYKFRIYPSKRLQETIEEHLNICRYLYNYLLEQKTKNPKLNKGDTQKLITEHKKENP
CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC
ELKKVHSKVLQIINNKLWGSLKALGKLKQNGHKVGRLRFKSSKNHYKTIEYNQSGFKVDY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEECCCCCEEEC
KTKRLKLSKIGEIHIKLHRKIKGVIKGIIIKKEPTGKWFAFFQVEEEPKPLPKTNKVVGI
HHHEEEHHHCCHHHHHHHHHHHHHHHHEEEEECCCCCEEEEEEECCCCCCCCCCCCEEEE
DLGIDGYAIDSEGNKFENPKFIAKTLGKIKKVQKNLSKKVRGSNNYKKTKLKLIKVYDKL
EECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
NNQKNDFLHKLSRYYINNYDKIVIEDLNIKSMIENKKGQKTLNRHILDGSWKKFINLLLY
CCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHEE
KAEGADREVILINPAYTSKKCSNCGCVVDSLKLSNRLFFCPNCGWNIDRDYNASLNILKS
ECCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHH
GLGESVVPAEGRPLLRVIPYIKVISGQVSPMSQEAPSVREG
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]