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The map label for this gene is ypdF [C]

Identifier: 150400586

GI number: 150400586

Start: 166128

End: 167168

Strand: Reverse

Name: ypdF [C]

Synonym: Maeo_0148

Alternate gene names: 150400586

Gene position: 167168-166128 (Counterclockwise)

Preceding gene: 150400587

Following gene: 150400584

Centisome position: 10.65

GC content: 26.8

Gene sequence:

>1041_bases
ATGGCAATACACAAAATAAAAGAATTTATGATATATTTAATACGAAATGACATAAAAAAGGCTATTATTCTAAAAAAAGA
AAATATTAATTATTTTTTAGAGAAATGCCCTCCAACATATTCTTATTTAATTTTTGATGTTGAACGAGATAAAATAATTT
TAAAAGTTCCAGAAATGGAATATCAAAGTGCAATATTTCATTCTACAAAATATATTTCTGTTGAAGTAATTGATAAATTA
GAGGAGGATTTTAGATATTGTAATGCTGTGGAAGATTCATTTCCTGTAAAATATTTAAAATACATTGATAAAGATTATAA
AATCATATCCGACAAATTAAATGAAATGAAATCCATAAAAAATCCAGATGAAATTGAATTAATTAAAAAAGCTGCAAAAA
TAAGCGATAAAGCTATTGAATTCGCAACAGATTATATTTTAAACTCCAAAGAACCAATTACGGAAAATCAATTGGCGGGA
GAAATTGAATATATTATGAAAAAAGAGGGAAGTGCAAAACCCTCATTTGATACAATTGCCATATCTGATAAAAAAACGGC
ACAACCACATGGAGCTCCATCAAATAACGAAATAAAAAATATATTATTAATGGATATTGGGGCTACTGTGGAAGGATATT
GTTCCGACATTACAAGAACAGTTATTTTAAATCAAGAGTATAAAAAATACGAAAAATATGTTAAGATATATAATATCGTA
AATAATGCTAAAAAAGAAGCCGAAAATAACCTTAAAGCAGGGGTTTCGGTTAAGGAATTAGATAAAATAGCACGGAAAGA
GATGGGAGAATATAATAAATATTTCACTCACTCATTAGGGCATGGAGTTGGAACAGAAATCCACGAACGCCCAGCATTGT
CCCAAAAATTGAAAGAAGATATTATATTAAAGGAAAATATGGTAATTACGATAGAACCTGCCATATATTTAGATAATTTT
GGAGTAAGAATTGAAGATTTATATGTTGTTAAAAAAAATGGGTTTAAAAAATTAAGTAATGCAAGAATTTTAGAATATTA
A

Upstream 100 bases:

>100_bases
TCAATTGGGGCAAATATTACTATTAAATAATATAAATTTTTATAATTCTATAAAATTATAATTAAAATATAAAACCGCGA
GAAATAAAAGATGATATAAT

Downstream 100 bases:

>100_bases
TAGAGAGATATTTTTAACTTTATGGGAGCTCCTTTCAATGAAACCAGCATTGCTGTTCTGCTATGTTTTTGTTAAATGAA
AATCAAAGATTTTCATAGCT

Product: peptidase M24

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MAIHKIKEFMIYLIRNDIKKAIILKKENINYFLEKCPPTYSYLIFDVERDKIILKVPEMEYQSAIFHSTKYISVEVIDKL
EEDFRYCNAVEDSFPVKYLKYIDKDYKIISDKLNEMKSIKNPDEIELIKKAAKISDKAIEFATDYILNSKEPITENQLAG
EIEYIMKKEGSAKPSFDTIAISDKKTAQPHGAPSNNEIKNILLMDIGATVEGYCSDITRTVILNQEYKKYEKYVKIYNIV
NNAKKEAENNLKAGVSVKELDKIARKEMGEYNKYFTHSLGHGVGTEIHERPALSQKLKEDIILKENMVITIEPAIYLDNF
GVRIEDLYVVKKNGFKKLSNARILEY

Sequences:

>Translated_346_residues
MAIHKIKEFMIYLIRNDIKKAIILKKENINYFLEKCPPTYSYLIFDVERDKIILKVPEMEYQSAIFHSTKYISVEVIDKL
EEDFRYCNAVEDSFPVKYLKYIDKDYKIISDKLNEMKSIKNPDEIELIKKAAKISDKAIEFATDYILNSKEPITENQLAG
EIEYIMKKEGSAKPSFDTIAISDKKTAQPHGAPSNNEIKNILLMDIGATVEGYCSDITRTVILNQEYKKYEKYVKIYNIV
NNAKKEAENNLKAGVSVKELDKIARKEMGEYNKYFTHSLGHGVGTEIHERPALSQKLKEDIILKENMVITIEPAIYLDNF
GVRIEDLYVVKKNGFKKLSNARILEY
>Mature_345_residues
AIHKIKEFMIYLIRNDIKKAIILKKENINYFLEKCPPTYSYLIFDVERDKIILKVPEMEYQSAIFHSTKYISVEVIDKLE
EDFRYCNAVEDSFPVKYLKYIDKDYKIISDKLNEMKSIKNPDEIELIKKAAKISDKAIEFATDYILNSKEPITENQLAGE
IEYIMKKEGSAKPSFDTIAISDKKTAQPHGAPSNNEIKNILLMDIGATVEGYCSDITRTVILNQEYKKYEKYVKIYNIVN
NAKKEAENNLKAGVSVKELDKIARKEMGEYNKYFTHSLGHGVGTEIHERPALSQKLKEDIILKENMVITIEPAIYLDNFG
VRIEDLYVVKKNGFKKLSNARILEY

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24B family [H]

Homologues:

Organism=Homo sapiens, GI11559925, Length=253, Percent_Identity=24.901185770751, Blast_Score=80, Evalue=2e-15,
Organism=Escherichia coli, GI1788728, Length=239, Percent_Identity=35.5648535564854, Blast_Score=161, Evalue=7e-41,
Organism=Escherichia coli, GI1789275, Length=259, Percent_Identity=25.4826254826255, Blast_Score=91, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6321118, Length=291, Percent_Identity=26.8041237113402, Blast_Score=87, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6320922, Length=263, Percent_Identity=23.574144486692, Blast_Score=72, Evalue=9e-14,
Organism=Drosophila melanogaster, GI21357079, Length=305, Percent_Identity=24.9180327868852, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI19920384, Length=259, Percent_Identity=20.0772200772201, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR001714
- InterPro:   IPR000994
- InterPro:   IPR001131 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 40061; Mature: 39930

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIHKIKEFMIYLIRNDIKKAIILKKENINYFLEKCPPTYSYLIFDVERDKIILKVPEME
CCHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHCCCCCEEEEEEEECCCEEEEECCCCH
YQSAIFHSTKYISVEVIDKLEEDFRYCNAVEDSFPVKYLKYIDKDYKIISDKLNEMKSIK
HHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHCC
NPDEIELIKKAAKISDKAIEFATDYILNSKEPITENQLAGEIEYIMKKEGSAKPSFDTIA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEE
ISDKKTAQPHGAPSNNEIKNILLMDIGATVEGYCSDITRTVILNQEYKKYEKYVKIYNIV
ECCCCCCCCCCCCCCCCHHEEEEEECCCCHHHHHHHHHHHHEECHHHHHHHHHHHHHHHH
NNAKKEAENNLKAGVSVKELDKIARKEMGEYNKYFTHSLGHGVGTEIHERPALSQKLKED
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHH
IILKENMVITIEPAIYLDNFGVRIEDLYVVKKNGFKKLSNARILEY
HEEECCEEEEEECEEEECCCCCEEEEEEEEECCCCHHHCCCCCCCC
>Mature Secondary Structure 
AIHKIKEFMIYLIRNDIKKAIILKKENINYFLEKCPPTYSYLIFDVERDKIILKVPEME
CHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHCCCCCEEEEEEEECCCEEEEECCCCH
YQSAIFHSTKYISVEVIDKLEEDFRYCNAVEDSFPVKYLKYIDKDYKIISDKLNEMKSIK
HHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHHHHHHHCC
NPDEIELIKKAAKISDKAIEFATDYILNSKEPITENQLAGEIEYIMKKEGSAKPSFDTIA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEE
ISDKKTAQPHGAPSNNEIKNILLMDIGATVEGYCSDITRTVILNQEYKKYEKYVKIYNIV
ECCCCCCCCCCCCCCCCHHEEEEEECCCCHHHHHHHHHHHHEECHHHHHHHHHHHHHHHH
NNAKKEAENNLKAGVSVKELDKIARKEMGEYNKYFTHSLGHGVGTEIHERPALSQKLKED
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHH
IILKENMVITIEPAIYLDNFGVRIEDLYVVKKNGFKKLSNARILEY
HEEECCEEEEEECEEEECCCCCEEEEEEEEECCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]