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The map label for this gene is ydeM [C]

Identifier: 150400543

GI number: 150400543

Start: 112163

End: 113035

Strand: Reverse

Name: ydeM [C]

Synonym: Maeo_0105

Alternate gene names: 150400543

Gene position: 113035-112163 (Counterclockwise)

Preceding gene: 150400544

Following gene: 150400540

Centisome position: 7.2

GC content: 23.02

Gene sequence:

>873_bases
ATGAGGAAAAAATATTTAATATTAAAAATAACCAACAGATGTAATTTAGATTGTATTTATTGTTATAATATGGGACATAA
GATAAATAAAAACATGGATTTTACGACTGCAAAAAATTCAATAGATTATATTTTAAATGATGGAACGGAGCTCCTAAAAA
TTCAATTTACAGGTGGCGAACCACTTTTAAATTTTGAGCTAATAGAAAAGGTAATATCATACTGTAAAAAAGAATATAAA
ACTAAAAATATTTCCTATGCAGTTCAAACAAACGGAACATTATTAAATAATGAATTAATTAAAAAAATTAAAGAGTTAAA
CATAAAAATAGGTATTAGTATCGATGGAATGGATATTAATGATACTTTAAGACCATATAAAAATGGGAGACCATCCACAT
TGGATACTTTAAAAGGAATATATTTATTAAAAAATAACAGCGTTCCTTTTGGAATTACAACAGTAATTACAAACAAAAAT
TTGCCCCATATGGTTGAATTTATTCAATATTTAATTGCGTTAGGGATTAAAAGTATTAGTTTTGATTTATTAAAGCCAAA
GCAAAAAGAACATTTAAATTTAATGCCAAATGAAGAAGAATTCAATAAAATTTTAAAAGAATTAAAAAACTATCCCATTT
ACATAAAAAATCTCCAAAAAAGACCAAAAGGCAAATATTGTTTTTTAAATACTGGGGATTTGTTATTTGTTAATGAATTT
GGGGATATTTACCCATGCCCTACGATGGAAGGCTATTTTTATATGGGAAATATAAATAAAGATAATGAAAATAATATAAA
AAAAAATATAAAAAAATTTGAAGTTAAAAATAATAAATGTTTTGCAAGAGAATATTTGATAAAAAAATTTTAA

Upstream 100 bases:

>100_bases
CAAATATAGCTCCTATATAATACATAATAGAAATAATATGCCATAATAAAATATAATAATAATAATACAGAAATCTGGAC
TGACCATATTTGGTGTAGAA

Downstream 100 bases:

>100_bases
AAAATTATTTTTATCTTTTTCCTGCTTCTTCCACCATTAAAAGAGCACAATATTCTCCACATACACTACAAGCATCTTCT
TCTTTTGGCGGGAGCTCCTC

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MRKKYLILKITNRCNLDCIYCYNMGHKINKNMDFTTAKNSIDYILNDGTELLKIQFTGGEPLLNFELIEKVISYCKKEYK
TKNISYAVQTNGTLLNNELIKKIKELNIKIGISIDGMDINDTLRPYKNGRPSTLDTLKGIYLLKNNSVPFGITTVITNKN
LPHMVEFIQYLIALGIKSISFDLLKPKQKEHLNLMPNEEEFNKILKELKNYPIYIKNLQKRPKGKYCFLNTGDLLFVNEF
GDIYPCPTMEGYFYMGNINKDNENNIKKNIKKFEVKNNKCFAREYLIKKF

Sequences:

>Translated_290_residues
MRKKYLILKITNRCNLDCIYCYNMGHKINKNMDFTTAKNSIDYILNDGTELLKIQFTGGEPLLNFELIEKVISYCKKEYK
TKNISYAVQTNGTLLNNELIKKIKELNIKIGISIDGMDINDTLRPYKNGRPSTLDTLKGIYLLKNNSVPFGITTVITNKN
LPHMVEFIQYLIALGIKSISFDLLKPKQKEHLNLMPNEEEFNKILKELKNYPIYIKNLQKRPKGKYCFLNTGDLLFVNEF
GDIYPCPTMEGYFYMGNINKDNENNIKKNIKKFEVKNNKCFAREYLIKKF
>Mature_290_residues
MRKKYLILKITNRCNLDCIYCYNMGHKINKNMDFTTAKNSIDYILNDGTELLKIQFTGGEPLLNFELIEKVISYCKKEYK
TKNISYAVQTNGTLLNNELIKKIKELNIKIGISIDGMDINDTLRPYKNGRPSTLDTLKGIYLLKNNSVPFGITTVITNKN
LPHMVEFIQYLIALGIKSISFDLLKPKQKEHLNLMPNEEEFNKILKELKNYPIYIKNLQKRPKGKYCFLNTGDLLFVNEF
GDIYPCPTMEGYFYMGNINKDNENNIKKNIKKFEVKNNKCFAREYLIKKF

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

Organism=Escherichia coli, GI87081923, Length=176, Percent_Identity=35.2272727272727, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI48994973, Length=178, Percent_Identity=25.8426966292135, Blast_Score=71, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 33841; Mature: 33841

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS01305 MOAA_NIFB_PQQE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKKYLILKITNRCNLDCIYCYNMGHKINKNMDFTTAKNSIDYILNDGTELLKIQFTGGE
CCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCEEECCCCEEEEECCCCEEEEEEECCCC
PLLNFELIEKVISYCKKEYKTKNISYAVQTNGTLLNNELIKKIKELNIKIGISIDGMDIN
CEECHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECHHHHHHHHHCCEEEEEEECCCCCC
DTLRPYKNGRPSTLDTLKGIYLLKNNSVPFGITTVITNKNLPHMVEFIQYLIALGIKSIS
CCCCCCCCCCCCHHHHHCCEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHCHHHHH
FDLLKPKQKEHLNLMPNEEEFNKILKELKNYPIYIKNLQKRPKGKYCFLNTGDLLFVNEF
HHHCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCCEEEEECC
GDIYPCPTMEGYFYMGNINKDNENNIKKNIKKFEVKNNKCFAREYLIKKF
CCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHEEECCCCHHHHHHHHHCC
>Mature Secondary Structure
MRKKYLILKITNRCNLDCIYCYNMGHKINKNMDFTTAKNSIDYILNDGTELLKIQFTGGE
CCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCEEECCCCEEEEECCCCEEEEEEECCCC
PLLNFELIEKVISYCKKEYKTKNISYAVQTNGTLLNNELIKKIKELNIKIGISIDGMDIN
CEECHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECHHHHHHHHHCCEEEEEEECCCCCC
DTLRPYKNGRPSTLDTLKGIYLLKNNSVPFGITTVITNKNLPHMVEFIQYLIALGIKSIS
CCCCCCCCCCCCHHHHHCCEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHCHHHHH
FDLLKPKQKEHLNLMPNEEEFNKILKELKNYPIYIKNLQKRPKGKYCFLNTGDLLFVNEF
HHHCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCCEEEEECC
GDIYPCPTMEGYFYMGNINKDNENNIKKNIKKFEVKNNKCFAREYLIKKF
CCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHEEECCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]