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The map label for this gene is vhcD [H]

Identifier: 150400537

GI number: 150400537

Start: 106564

End: 106989

Strand: Reverse

Name: vhcD [H]

Synonym: Maeo_0099

Alternate gene names: 150400537

Gene position: 106989-106564 (Counterclockwise)

Preceding gene: 150400538

Following gene: 150400536

Centisome position: 6.82

GC content: 36.15

Gene sequence:

>426_bases
GTGACAGATTGGGAACCAAAAATAATAGGGTTTTGCTGTAACTGGTGCACATACGGTGGAGCAGACACCGCAGGAGTAGG
TAGAATGCAATACCCTCCAAGCATTAGAATAATTAGAGTGATGTGTTCCGGAAGAATTGAACCCTCTTTAATTTTAAAAG
CATTTCATGAGGGTGCTGATGGTGTTTTTGTAGGTGGTTGCCATTTAGCAGATTGTCATTATGATTCTGGAAATTACAAA
TGGAGAAGAAGAGCGATATTTTTAGAAGAATTACTTCCCGAACTGGGTATTGAACCAGACCGATTTAAATTTGAATGGAT
TTCAGCATCAGAAGGAGAAAAATTCCAAAAAACCATGGCTGAAGTATATAATACCGTAAAATCATTAGGCCCTTTAAAAT
TAAAAGATGAATTAAATAAAGAATAA

Upstream 100 bases:

>100_bases
GATTTAATTTTAACTATAATATTATATATATCACATATAATATTTATATTATATATTAAAATATATAATATACATACCAA
TAATATTAATAGGTGATTAA

Downstream 100 bases:

>100_bases
TTGTTAGAAAACCGAATAATAATAGATAATAAACTAAAATAAAAATAGTCATAATTGGTGGTAAAATGGTAAAATTAGCA
ACAACATGGCTTGGATGTTG

Product: methyl-viologen-reducing hydrogenase delta subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MTDWEPKIIGFCCNWCTYGGADTAGVGRMQYPPSIRIIRVMCSGRIEPSLILKAFHEGADGVFVGGCHLADCHYDSGNYK
WRRRAIFLEELLPELGIEPDRFKFEWISASEGEKFQKTMAEVYNTVKSLGPLKLKDELNKE

Sequences:

>Translated_141_residues
MTDWEPKIIGFCCNWCTYGGADTAGVGRMQYPPSIRIIRVMCSGRIEPSLILKAFHEGADGVFVGGCHLADCHYDSGNYK
WRRRAIFLEELLPELGIEPDRFKFEWISASEGEKFQKTMAEVYNTVKSLGPLKLKDELNKE
>Mature_140_residues
TDWEPKIIGFCCNWCTYGGADTAGVGRMQYPPSIRIIRVMCSGRIEPSLILKAFHEGADGVFVGGCHLADCHYDSGNYKW
RRRAIFLEELLPELGIEPDRFKFEWISASEGEKFQKTMAEVYNTVKSLGPLKLKDELNKE

Specific function: Unknown

COG id: COG1908

COG function: function code C; Coenzyme F420-reducing hydrogenase, delta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mvhD/vhuD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003813 [H]

Pfam domain/function: PF02662 FlpD [H]

EC number: NA

Molecular weight: Translated: 16026; Mature: 15894

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDWEPKIIGFCCNWCTYGGADTAGVGRMQYPPSIRIIRVMCSGRIEPSLILKAFHEGAD
CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCC
GVFVGGCHLADCHYDSGNYKWRRRAIFLEELLPELGIEPDRFKFEWISASEGEKFQKTMA
EEEECCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH
EVYNTVKSLGPLKLKDELNKE
HHHHHHHHCCCEEEHHHCCCC
>Mature Secondary Structure 
TDWEPKIIGFCCNWCTYGGADTAGVGRMQYPPSIRIIRVMCSGRIEPSLILKAFHEGAD
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCC
GVFVGGCHLADCHYDSGNYKWRRRAIFLEELLPELGIEPDRFKFEWISASEGEKFQKTMA
EEEECCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHH
EVYNTVKSLGPLKLKDELNKE
HHHHHHHHCCCEEEHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1603063 [H]