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The map label for this gene is xerD [C]

Identifier: 150400371

GI number: 150400371

Start: 1652199

End: 1653167

Strand: Reverse

Name: xerD [C]

Synonym: Mevan_1634

Alternate gene names: 150400371

Gene position: 1653167-1652199 (Counterclockwise)

Preceding gene: 150400372

Following gene: 150400370

Centisome position: 96.11

GC content: 33.23

Gene sequence:

>969_bases
ATGAATGACCTAAAAAATAAACTGCTCTTAAAACCTCGAAAAGAAGTTTCAAAAGAACCGCCTGAGCTTAAAAAATGGCT
CAACAAGTTTAAAGAAGAAAGAGAATTTGACGGAATTAAAACATCAACAATTGGAAACGATATAACCCGATTGAAAGTAT
TTTTAAACTTCGTACTTGAACGGCTTGAAAAGTCCCCTAACGAACTTACAAATGCCGACTTTGTAAAATTTTTTAACTTT
TTGGAACGGGAAAGAAAACTTTCAAGAAATACCCAAAATAGATACTACCAACTTTTAAAGGTCTTTTACAGGCTCATGCG
ACTTGAAAACTTTAAAGACTTTAAAGAAGAAAGCCAAGAGCGAAAACGGTTCTCAGGTTTTGAAATAAAGCACTACGATG
CGGTTTCGTCAGAACTTTTAAACGACATAATAAATATCGTTGTTGAAAGTAAAAGCAGAACCAAAATCCGGGATGCAACA
ATTATCCGATTTCTTTGGGATTCAGGATGTAGAATTTCTGAAGCTCTAAATTTAACATACGGGGATTCAGACCTTGAAGA
AGGAACATTCGTTTTAAGAAATACTAAAGGGAATGCTGAAAGAACAGTTGTATGTTCAAGAGATACATTGGATGTAATAA
ACTACTACGTCCAGTACAATGTCAAAAAAGGATCTAAAGATAAGCTATTTCAAAATTCTGATGGAGAACCTATCGGAAGG
GGATGGATTGGGGAAATTTTTAGAAAAGCTGTCGATAGATTGAAAAAAGAAGGAAGGATTCCAGCAAACAAAAAAGTCGT
TGTTCATTCATTGAGACACGGCAGAGCTGTTGATTTACTTGAAAAGGGGCAACCAATAGATATTGTAAAAGAATATTTAG
GTCATAAATCACTTGATACAACTCTTTTCTATTCTCATTCAAAGGAAAGAAAGGAAAAAATGATTAAAAATATTCAAAAA
ATATTATAA

Upstream 100 bases:

>100_bases
AGAACAATTAAATTATCAAAACAAGAACAAGGCATTACCGACAAATTCGGAAAAGCAACAAACATTCTTGTAAATTATTT
AATCATCGAGGCTGAGCAGA

Downstream 100 bases:

>100_bases
TTAAAATGTACTATACAGTAATGAGCATATTTAGAATAATTTTTGGTGAATAATTTGATGAAAAAATCCCATGAAATACA
TAAAAATCAAGGCAAATTAA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MNDLKNKLLLKPRKEVSKEPPELKKWLNKFKEEREFDGIKTSTIGNDITRLKVFLNFVLERLEKSPNELTNADFVKFFNF
LERERKLSRNTQNRYYQLLKVFYRLMRLENFKDFKEESQERKRFSGFEIKHYDAVSSELLNDIINIVVESKSRTKIRDAT
IIRFLWDSGCRISEALNLTYGDSDLEEGTFVLRNTKGNAERTVVCSRDTLDVINYYVQYNVKKGSKDKLFQNSDGEPIGR
GWIGEIFRKAVDRLKKEGRIPANKKVVVHSLRHGRAVDLLEKGQPIDIVKEYLGHKSLDTTLFYSHSKERKEKMIKNIQK
IL

Sequences:

>Translated_322_residues
MNDLKNKLLLKPRKEVSKEPPELKKWLNKFKEEREFDGIKTSTIGNDITRLKVFLNFVLERLEKSPNELTNADFVKFFNF
LERERKLSRNTQNRYYQLLKVFYRLMRLENFKDFKEESQERKRFSGFEIKHYDAVSSELLNDIINIVVESKSRTKIRDAT
IIRFLWDSGCRISEALNLTYGDSDLEEGTFVLRNTKGNAERTVVCSRDTLDVINYYVQYNVKKGSKDKLFQNSDGEPIGR
GWIGEIFRKAVDRLKKEGRIPANKKVVVHSLRHGRAVDLLEKGQPIDIVKEYLGHKSLDTTLFYSHSKERKEKMIKNIQK
IL
>Mature_322_residues
MNDLKNKLLLKPRKEVSKEPPELKKWLNKFKEEREFDGIKTSTIGNDITRLKVFLNFVLERLEKSPNELTNADFVKFFNF
LERERKLSRNTQNRYYQLLKVFYRLMRLENFKDFKEESQERKRFSGFEIKHYDAVSSELLNDIINIVVESKSRTKIRDAT
IIRFLWDSGCRISEALNLTYGDSDLEEGTFVLRNTKGNAERTVVCSRDTLDVINYYVQYNVKKGSKDKLFQNSDGEPIGR
GWIGEIFRKAVDRLKKEGRIPANKKVVVHSLRHGRAVDLLEKGQPIDIVKEYLGHKSLDTTLFYSHSKERKEKMIKNIQK
IL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37952; Mature: 37952

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDLKNKLLLKPRKEVSKEPPELKKWLNKFKEEREFDGIKTSTIGNDITRLKVFLNFVLE
CCCHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHH
RLEKSPNELTNADFVKFFNFLERERKLSRNTQNRYYQLLKVFYRLMRLENFKDFKEESQE
HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKRFSGFEIKHYDAVSSELLNDIINIVVESKSRTKIRDATIIRFLWDSGCRISEALNLTY
HHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCC
GDSDLEEGTFVLRNTKGNAERTVVCSRDTLDVINYYVQYNVKKGSKDKLFQNSDGEPIGR
CCCCCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCC
GWIGEIFRKAVDRLKKEGRIPANKKVVVHSLRHGRAVDLLEKGQPIDIVKEYLGHKSLDT
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHCCCCCCH
TLFYSHSKERKEKMIKNIQKIL
HHEECCCHHHHHHHHHHHHHHC
>Mature Secondary Structure
MNDLKNKLLLKPRKEVSKEPPELKKWLNKFKEEREFDGIKTSTIGNDITRLKVFLNFVLE
CCCHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHH
RLEKSPNELTNADFVKFFNFLERERKLSRNTQNRYYQLLKVFYRLMRLENFKDFKEESQE
HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKRFSGFEIKHYDAVSSELLNDIINIVVESKSRTKIRDATIIRFLWDSGCRISEALNLTY
HHHHCCCCEEHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCC
GDSDLEEGTFVLRNTKGNAERTVVCSRDTLDVINYYVQYNVKKGSKDKLFQNSDGEPIGR
CCCCCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCC
GWIGEIFRKAVDRLKKEGRIPANKKVVVHSLRHGRAVDLLEKGQPIDIVKEYLGHKSLDT
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHCCCCCCH
TLFYSHSKERKEKMIKNIQKIL
HHEECCCHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]