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The map label for this gene is xerD [C]

Identifier: 150400365

GI number: 150400365

Start: 1643290

End: 1643838

Strand: Reverse

Name: xerD [C]

Synonym: Mevan_1628

Alternate gene names: 150400365

Gene position: 1643838-1643290 (Counterclockwise)

Preceding gene: 150400370

Following gene: 150400364

Centisome position: 95.57

GC content: 29.14

Gene sequence:

>549_bases
ATGGTAAGACACTATTGTAAGGACTGGCTTACTAAGGATGAATTAAAAAAATTCATAGACAATATAGATTCTAAAGAACA
TAAGTTATTTTTTAAAATGCTATACGGGATGGCATTAAGGGTTTCAGAATTGTTAACTATAACTGTCAAAAACATCAATC
TAAAGGAAGGTGTTTGTAAGCTATTAGATACTAAAACAGAAAGATTTGAAATAACGGTAATTCCTGAATGGCTTTATTCA
GATATTTTCGGACATATTTTAGACAATAATTTAAATGATGAAGACCCCCTTTTTAAATTTAAAAACAGGACTTATGCATG
GGAGTTAGTTAAAAAATACACTAAAGTTGCAAAAATAAATAAAGAATTTTCTACCCATACATTTAGGAGAAGTAGGGCGT
TACACTTATTAAATGACGGCGTACCGCTTGAAAAAGTGAGTAAATACTTACGTCATAAATCAATAAACACTACAATGCAC
TATCTAAAAATTACCGTTGAAGATATTAAAAAAGAACTTAATAAAATTGGGGATTGGTACGATTTATAG

Upstream 100 bases:

>100_bases
ATGATAATATGTTAAGAATAAAATTTTGAGTAGATTATTTTATTGGTCTTTAAATTTTAAGTTTTTTTTAAGATACGTTA
GGTGCGTTTGGTTGGTAAAA

Downstream 100 bases:

>100_bases
CCTAATAACACTATTAAAAATAAAATATTAGAGGTTAAATTTACGTAAATATCAGTTATAGCTTAATAGGGGGCAATATG
GAAAAAAATTATAAAACCAT

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MVRHYCKDWLTKDELKKFIDNIDSKEHKLFFKMLYGMALRVSELLTITVKNINLKEGVCKLLDTKTERFEITVIPEWLYS
DIFGHILDNNLNDEDPLFKFKNRTYAWELVKKYTKVAKINKEFSTHTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTMH
YLKITVEDIKKELNKIGDWYDL

Sequences:

>Translated_182_residues
MVRHYCKDWLTKDELKKFIDNIDSKEHKLFFKMLYGMALRVSELLTITVKNINLKEGVCKLLDTKTERFEITVIPEWLYS
DIFGHILDNNLNDEDPLFKFKNRTYAWELVKKYTKVAKINKEFSTHTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTMH
YLKITVEDIKKELNKIGDWYDL
>Mature_182_residues
MVRHYCKDWLTKDELKKFIDNIDSKEHKLFFKMLYGMALRVSELLTITVKNINLKEGVCKLLDTKTERFEITVIPEWLYS
DIFGHILDNNLNDEDPLFKFKNRTYAWELVKKYTKVAKINKEFSTHTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTMH
YLKITVEDIKKELNKIGDWYDL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 21818; Mature: 21818

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRHYCKDWLTKDELKKFIDNIDSKEHKLFFKMLYGMALRVSELLTITVKNINLKEGVCK
CCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHH
LLDTKTERFEITVIPEWLYSDIFGHILDNNLNDEDPLFKFKNRTYAWELVKKYTKVAKIN
HHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHH
KEFSTHTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVEDIKKELNKIGDWY
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
DL
CC
>Mature Secondary Structure
MVRHYCKDWLTKDELKKFIDNIDSKEHKLFFKMLYGMALRVSELLTITVKNINLKEGVCK
CCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHH
LLDTKTERFEITVIPEWLYSDIFGHILDNNLNDEDPLFKFKNRTYAWELVKKYTKVAKIN
HHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHH
KEFSTHTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTMHYLKITVEDIKKELNKIGDWY
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
DL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA