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The map label for this gene is 150400002

Identifier: 150400002

GI number: 150400002

Start: 1289284

End: 1289775

Strand: Reverse

Name: 150400002

Synonym: Mevan_1260

Alternate gene names: NA

Gene position: 1289775-1289284 (Counterclockwise)

Preceding gene: 150400003

Following gene: 150400001

Centisome position: 74.98

GC content: 30.08

Gene sequence:

>492_bases
ATGATAATTACAACTTCAAGAAAACCTTCACAGCGTACTAGAAGTTTTGTAAATGACCTTGCAAGAGTTTTCAACTTTGA
AGTCCAAAATCGGGGCAAAGTTGCTCTCTCAGAAATTGTAGAAAATAAAAAGGATATTGTAATCATTGAGGAATTTAAAG
GAAACCCTGCAAGGTTAAAATTATACGATTTTAAGCTAAATAAAATTTTATCAATGAATATTTCTTTAAAACTGCAAAGG
GAAGTTTCAGGAAAAGTTTTTAAAACATCTGGAAATATTGGTTCACTCTTCGATAAAAAAACAGAGCACTTAAAAGGCTT
ATTTTACGATTTCCTATTTAGCAAATTAAAGTACGATGAATGTAATTTTAGTACCGCATTGCACTTTAAATACGTTGATA
GTTCCACATTTTATATTGAAATCCATGATGGTTTGGAAAATATCGGCCCAAGTATAAAAGTAAAAACCGTTGTTTTGATG
GATATTGAATAG

Upstream 100 bases:

>100_bases
CTCTTGAGGAAATTGGATTAAAGGCAAAATGCCCTCACTGTAGTAACAGGGTATTGATAAAATTGAGGCCCAGAGTAGTC
AAGAAAGTACAGGCTAGATA

Downstream 100 bases:

>100_bases
TTGAAAAAATGAACTGTAAAAATATCAGTAACCTGCCAAAATTCGATTTGGAACTGGTTTTTGAAAATCCAAAAAAAGCC
GAAATTATCTTTAATTCTGT

Product: ribosomal biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MIITTSRKPSQRTRSFVNDLARVFNFEVQNRGKVALSEIVENKKDIVIIEEFKGNPARLKLYDFKLNKILSMNISLKLQR
EVSGKVFKTSGNIGSLFDKKTEHLKGLFYDFLFSKLKYDECNFSTALHFKYVDSSTFYIEIHDGLENIGPSIKVKTVVLM
DIE

Sequences:

>Translated_163_residues
MIITTSRKPSQRTRSFVNDLARVFNFEVQNRGKVALSEIVENKKDIVIIEEFKGNPARLKLYDFKLNKILSMNISLKLQR
EVSGKVFKTSGNIGSLFDKKTEHLKGLFYDFLFSKLKYDECNFSTALHFKYVDSSTFYIEIHDGLENIGPSIKVKTVVLM
DIE
>Mature_163_residues
MIITTSRKPSQRTRSFVNDLARVFNFEVQNRGKVALSEIVENKKDIVIIEEFKGNPARLKLYDFKLNKILSMNISLKLQR
EVSGKVFKTSGNIGSLFDKKTEHLKGLFYDFLFSKLKYDECNFSTALHFKYVDSSTFYIEIHDGLENIGPSIKVKTVVLM
DIE

Specific function: Probably involved in the biogenesis of the ribosome [H]

COG id: COG2136

COG function: function code JA; Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Brix domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004154
- InterPro:   IPR007109 [H]

Pfam domain/function: PF04427 Brix [H]

EC number: NA

Molecular weight: Translated: 18810; Mature: 18810

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS50833 BRIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIITTSRKPSQRTRSFVNDLARVFNFEVQNRGKVALSEIVENKKDIVIIEEFKGNPARLK
CEEECCCCCHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHCCCCCEEEEEECCCCCEEEE
LYDFKLNKILSMNISLKLQREVSGKVFKTSGNIGSLFDKKTEHLKGLFYDFLFSKLKYDE
EEEEEECEEEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
CNFSTALHFKYVDSSTFYIEIHDGLENIGPSIKVKTVVLMDIE
CCCEEEEEEEEECCCEEEEEECCCHHHCCCCEEEEEEEEEECC
>Mature Secondary Structure
MIITTSRKPSQRTRSFVNDLARVFNFEVQNRGKVALSEIVENKKDIVIIEEFKGNPARLK
CEEECCCCCHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHCCCCCEEEEEECCCCCEEEE
LYDFKLNKILSMNISLKLQREVSGKVFKTSGNIGSLFDKKTEHLKGLFYDFLFSKLKYDE
EEEEEECEEEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
CNFSTALHFKYVDSSTFYIEIHDGLENIGPSIKVKTVVLMDIE
CCCEEEEEEEEECCCEEEEEECCCHHHCCCCEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA