Click here to switch to the map view.

The map label for this gene is pfdB

Identifier: 150400000

GI number: 150400000

Start: 1288608

End: 1288949

Strand: Reverse

Name: pfdB

Synonym: Mevan_1258

Alternate gene names: 150400000

Gene position: 1288949-1288608 (Counterclockwise)

Preceding gene: 150400001

Following gene: 150399999

Centisome position: 74.94

GC content: 33.33

Gene sequence:

>342_bases
ATGGAATTACCTCCAAATGTTCAAAATCAGTTAATGCAGTTTCAACAGCTTCAACAACAGTTACAAATGATAATGTATCA
AAAACAGCAGTTTGAAACCCAGTTAAAAGAAATGGAAAAAGCCGTTGAAGAAATGGAAAAGTCAACTTCAGACGAAGTAT
TCAAAATGGCAGGCGGAATACTCGTTAAAAGAAATAAAGATGAAGTAAAAGAAGAATTAAGCGAAAAAATGGAAACAATG
AAGTTAAGAGTTGCAACTTTTGAAAAACAGGAAGAAAAGATGCAGAAAAGATACGCCGAATTACAAGAAAACCTTCAAAA
GGTTATCGGTCAAGGCCATTAA

Upstream 100 bases:

>100_bases
TAAACGTTGCAGAAGGTATATATAAACTAACTGAAAATGAATAATAGTCGATAAATAAAATGAGTTTAAAAATGATTAAA
TTAAAAAGAGGATTGAAATC

Downstream 100 bases:

>100_bases
TTTCTATTTTTAATATATATTAATTATTTTTTTAGGGTTCTCGTTATGAAAAAAGATTTAGAAATTTTAAAAGATTATTT
AAAAGAAGAAGATATTTTAC

Product: prefoldin subunit beta

Products: NA

Alternate protein names: GimC subunit beta

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MELPPNVQNQLMQFQQLQQQLQMIMYQKQQFETQLKEMEKAVEEMEKSTSDEVFKMAGGILVKRNKDEVKEELSEKMETM
KLRVATFEKQEEKMQKRYAELQENLQKVIGQGH

Sequences:

>Translated_113_residues
MELPPNVQNQLMQFQQLQQQLQMIMYQKQQFETQLKEMEKAVEEMEKSTSDEVFKMAGGILVKRNKDEVKEELSEKMETM
KLRVATFEKQEEKMQKRYAELQENLQKVIGQGH
>Mature_113_residues
MELPPNVQNQLMQFQQLQQQLQMIMYQKQQFETQLKEMEKAVEEMEKSTSDEVFKMAGGILVKRNKDEVKEELSEKMETM
KLRVATFEKQEEKMQKRYAELQENLQKVIGQGH

Specific function: Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding

COG id: COG1382

COG function: function code O; Prefoldin, chaperonin cofactor

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prefoldin subunit beta family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PFDB_METVS (A6URN3)

Other databases:

- EMBL:   CP000742
- RefSeq:   YP_001323767.1
- ProteinModelPortal:   A6URN3
- SMR:   A6URN3
- STRING:   A6URN3
- GeneID:   5324565
- GenomeReviews:   CP000742_GR
- KEGG:   mvn:Mevan_1258
- eggNOG:   arNOG14126
- HOGENOM:   HBG726985
- OMA:   ELPPQIQ
- ProtClustDB:   CLSK876412
- HAMAP:   MF_00307
- InterPro:   IPR012713
- InterPro:   IPR002777
- InterPro:   IPR009053
- TIGRFAMs:   TIGR02338

Pfam domain/function: PF01920 Prefoldin_2; SSF46579 Prefoldin

EC number: NA

Molecular weight: Translated: 13500; Mature: 13500

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
8.8 %Met     (Translated Protein)
8.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
8.8 %Met     (Mature Protein)
8.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELPPNVQNQLMQFQQLQQQLQMIMYQKQQFETQLKEMEKAVEEMEKSTSDEVFKMAGGI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
LVKRNKDEVKEELSEKMETMKLRVATFEKQEEKMQKRYAELQENLQKVIGQGH
HEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MELPPNVQNQLMQFQQLQQQLQMIMYQKQQFETQLKEMEKAVEEMEKSTSDEVFKMAGGI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
LVKRNKDEVKEELSEKMETMKLRVATFEKQEEKMQKRYAELQENLQKVIGQGH
HEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA