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The map label for this gene is hofB [C]

Identifier: 150399790

GI number: 150399790

Start: 1062815

End: 1064476

Strand: Reverse

Name: hofB [C]

Synonym: Mevan_1043

Alternate gene names: 150399790

Gene position: 1064476-1062815 (Counterclockwise)

Preceding gene: 150399791

Following gene: 150399789

Centisome position: 61.89

GC content: 32.97

Gene sequence:

>1662_bases
ATGGGACTGTTTGATAGGATTCAAAAATCCGATAAACCAGCTATTGCTAAAAAAGATTTAGCTGAAAGTAATATAAACAC
CCCAAATATTTACGAAAATAAAGAAAATAGTTTAGAAGACACAAAACAGGAACCTCCCAAAAAAGTTGGTTTTTCGATAT
CCCGCGATATAAAAAAACAAGAAATAGAAAATTTTACTAGTGATTCAAGGTCCACTATTTTAGATAAGTATTTTGTAAGA
GTTGATGAAATCGATTTTGATATTATTATCGAAAAAGAAGAAGGAGTTACAAAGTATAAAATACCCGAAATTACATTAAT
GAACACCGCCCTTTCAAAATTCTCTGAACTGGATATAAAGACTATTAAAGCAGAATTATCAGAATCATCACTACAGAAAT
TAGGGCAAATTCAAGGATATTTAAAAAGTTTTTCAGAAAAAAATAACTTACATTTAAGGGATATTGAAATACTTCATTTA
TCGCACTATTTTTACTTAATTATTGGAAAACTTGGACTTTTAGAAATTCCACTAAATGATGATAGTCTAGAAGAATTAAT
GGTAAATGGAATTGATTCTCCAGCATATGTATTCCATAGAAAATACCAAATGTGTGAAACAAACATACGTTCAGATCGCC
ACGAAGCAACAAGAGTTGTTGAAAGTATTGCATACCTTGCAGGAAGAACTATTGATTCTAGAACGCCATTACTTGACGCT
TTTTTACCTGATGGAAGTAGAGTAAATGCAACAATGCAAGATGTAACTCTTAGGGGGAGTACAATTACAATTCGTAAATT
TAGTGCAGACCCCTTAACAATTGTTGATTTAATAAGATATGGAACTTTTGATTTAGAACTTGCATCTTTCCTTTGGCAGG
CTGTTGAAGGATATTTTGGTTCAAAACCAGCAAATACCTTAATTGTTGGTGGTACAGGTTCAGGTAAGACTACAACATTA
AACGTTGTTTCAATGTTTTCAATGTATAACGATAGAATTATCACTGTTGAAGATACGCCAGAGTTGCAAGTACCGTTAAA
TCACGTTATAAAAATGATTACAAGGCCCGGAAGACCTGGAATTCAAGGTTATGAAATTACAATGGATGATTTAATTAAAA
ACTCACTTAGAATGAGGCCAGACCGGATTTTTGTAGGGGAAGTAAGGGGTAGTGAAGCCCACTCTCTGTTGGTTGCAATG
AATACTGGACATGATGGTTGTTCAGGGACTTTACACGCAAACAGTGCAGATGAAGCAATAATAAGACTTATTAACCACCC
GATGAGTGTTCCAAAGGTTATGCTTTCTTCAGTTGATTTTATTATAAACCAGCAACGAATTAAGAGAAATAAGAAAACCA
TAAGAAGAATTTTAGGGGTTGTTGAAATTGGCGGAAGTGGTGAAAATATTACCAAAACCGAGTTATTTAAGTACGACGGT
GTAAGTGACAGTGTTGTAAAAACGGGAATTTGTATGTGGGAAGAAGAAGTCTGTGCAATTGCAGGAATTACAAGGGATGA
ATTAATGGATGATCGAATAAATAGAAAAAAAGTATTAAAGTATATGGTAAATAACAATATTAACGGAATTAAAAAGGTAG
GGGATGTAATTAAACAGTATCAAGAAAACCCAGAAAATGTTTTAAAGCATATACTGGAGTAG

Upstream 100 bases:

>100_bases
GATGTTGCAGGAGTTACTGAAGTTACAATTAGAAATAGATACAAGGAACTTACTGAACACTTAGATATCGACGTTACACT
TTAAAAAAGGGTGAACTGTT

Downstream 100 bases:

>100_bases
TTGTGATTTTAATGAATGTAAGACGTAAAAAAGAACCGAGTTTTTTAGATAAACTGTCGAATTTATTAAAAAGTACTAAA
ATTACGAAACGGAAAAATGT

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 553; Mature: 552

Protein sequence:

>553_residues
MGLFDRIQKSDKPAIAKKDLAESNINTPNIYENKENSLEDTKQEPPKKVGFSISRDIKKQEIENFTSDSRSTILDKYFVR
VDEIDFDIIIEKEEGVTKYKIPEITLMNTALSKFSELDIKTIKAELSESSLQKLGQIQGYLKSFSEKNNLHLRDIEILHL
SHYFYLIIGKLGLLEIPLNDDSLEELMVNGIDSPAYVFHRKYQMCETNIRSDRHEATRVVESIAYLAGRTIDSRTPLLDA
FLPDGSRVNATMQDVTLRGSTITIRKFSADPLTIVDLIRYGTFDLELASFLWQAVEGYFGSKPANTLIVGGTGSGKTTTL
NVVSMFSMYNDRIITVEDTPELQVPLNHVIKMITRPGRPGIQGYEITMDDLIKNSLRMRPDRIFVGEVRGSEAHSLLVAM
NTGHDGCSGTLHANSADEAIIRLINHPMSVPKVMLSSVDFIINQQRIKRNKKTIRRILGVVEIGGSGENITKTELFKYDG
VSDSVVKTGICMWEEEVCAIAGITRDELMDDRINRKKVLKYMVNNNINGIKKVGDVIKQYQENPENVLKHILE

Sequences:

>Translated_553_residues
MGLFDRIQKSDKPAIAKKDLAESNINTPNIYENKENSLEDTKQEPPKKVGFSISRDIKKQEIENFTSDSRSTILDKYFVR
VDEIDFDIIIEKEEGVTKYKIPEITLMNTALSKFSELDIKTIKAELSESSLQKLGQIQGYLKSFSEKNNLHLRDIEILHL
SHYFYLIIGKLGLLEIPLNDDSLEELMVNGIDSPAYVFHRKYQMCETNIRSDRHEATRVVESIAYLAGRTIDSRTPLLDA
FLPDGSRVNATMQDVTLRGSTITIRKFSADPLTIVDLIRYGTFDLELASFLWQAVEGYFGSKPANTLIVGGTGSGKTTTL
NVVSMFSMYNDRIITVEDTPELQVPLNHVIKMITRPGRPGIQGYEITMDDLIKNSLRMRPDRIFVGEVRGSEAHSLLVAM
NTGHDGCSGTLHANSADEAIIRLINHPMSVPKVMLSSVDFIINQQRIKRNKKTIRRILGVVEIGGSGENITKTELFKYDG
VSDSVVKTGICMWEEEVCAIAGITRDELMDDRINRKKVLKYMVNNNINGIKKVGDVIKQYQENPENVLKHILE
>Mature_552_residues
GLFDRIQKSDKPAIAKKDLAESNINTPNIYENKENSLEDTKQEPPKKVGFSISRDIKKQEIENFTSDSRSTILDKYFVRV
DEIDFDIIIEKEEGVTKYKIPEITLMNTALSKFSELDIKTIKAELSESSLQKLGQIQGYLKSFSEKNNLHLRDIEILHLS
HYFYLIIGKLGLLEIPLNDDSLEELMVNGIDSPAYVFHRKYQMCETNIRSDRHEATRVVESIAYLAGRTIDSRTPLLDAF
LPDGSRVNATMQDVTLRGSTITIRKFSADPLTIVDLIRYGTFDLELASFLWQAVEGYFGSKPANTLIVGGTGSGKTTTLN
VVSMFSMYNDRIITVEDTPELQVPLNHVIKMITRPGRPGIQGYEITMDDLIKNSLRMRPDRIFVGEVRGSEAHSLLVAMN
TGHDGCSGTLHANSADEAIIRLINHPMSVPKVMLSSVDFIINQQRIKRNKKTIRRILGVVEIGGSGENITKTELFKYDGV
SDSVVKTGICMWEEEVCAIAGITRDELMDDRINRKKVLKYMVNNNINGIKKVGDVIKQYQENPENVLKHILE

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1786296, Length=208, Percent_Identity=28.8461538461538, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011451
- InterPro:   IPR003586
- InterPro:   IPR003587
- InterPro:   IPR006141
- InterPro:   IPR001482 [H]

Pfam domain/function: PF07591 DUF1557; PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 62414; Mature: 62283

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLFDRIQKSDKPAIAKKDLAESNINTPNIYENKENSLEDTKQEPPKKVGFSISRDIKKQ
CCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCHHHCCCHHHHHHHH
EIENFTSDSRSTILDKYFVRVDEIDFDIIIEKEEGVTKYKIPEITLMNTALSKFSELDIK
HHHHHCCCHHHHHHHHHHHEEECCCEEEEEECCCCCCEEECCCEEEHHHHHHHHHHHHHH
TIKAELSESSLQKLGQIQGYLKSFSEKNNLHLRDIEILHLSHYFYLIIGKLGLLEIPLND
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEHHHHHHHHHCCCCEEEECCCC
DSLEELMVNGIDSPAYVFHRKYQMCETNIRSDRHEATRVVESIAYLAGRTIDSRTPLLDA
CHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHH
FLPDGSRVNATMQDVTLRGSTITIRKFSADPLTIVDLIRYGTFDLELASFLWQAVEGYFG
CCCCCCCCCCCHHHEEECCCEEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
SKPANTLIVGGTGSGKTTTLNVVSMFSMYNDRIITVEDTPELQVPLNHVIKMITRPGRPG
CCCCCEEEEECCCCCCEEEHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHCCCCCC
IQGYEITMDDLIKNSLRMRPDRIFVGEVRGSEAHSLLVAMNTGHDGCSGTLHANSADEAI
CCCEEEEHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCEEECCCHHHHH
IRLINHPMSVPKVMLSSVDFIINQQRIKRNKKTIRRILGVVEIGGSGENITKTELFKYDG
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHEEEECC
VSDSVVKTGICMWEEEVCAIAGITRDELMDDRINRKKVLKYMVNNNINGIKKVGDVIKQY
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
QENPENVLKHILE
HCCHHHHHHHHCC
>Mature Secondary Structure 
GLFDRIQKSDKPAIAKKDLAESNINTPNIYENKENSLEDTKQEPPKKVGFSISRDIKKQ
CHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCHHHCCCHHHHHHHH
EIENFTSDSRSTILDKYFVRVDEIDFDIIIEKEEGVTKYKIPEITLMNTALSKFSELDIK
HHHHHCCCHHHHHHHHHHHEEECCCEEEEEECCCCCCEEECCCEEEHHHHHHHHHHHHHH
TIKAELSESSLQKLGQIQGYLKSFSEKNNLHLRDIEILHLSHYFYLIIGKLGLLEIPLND
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEHHHHHHHHHCCCCEEEECCCC
DSLEELMVNGIDSPAYVFHRKYQMCETNIRSDRHEATRVVESIAYLAGRTIDSRTPLLDA
CHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHH
FLPDGSRVNATMQDVTLRGSTITIRKFSADPLTIVDLIRYGTFDLELASFLWQAVEGYFG
CCCCCCCCCCCHHHEEECCCEEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
SKPANTLIVGGTGSGKTTTLNVVSMFSMYNDRIITVEDTPELQVPLNHVIKMITRPGRPG
CCCCCEEEEECCCCCCEEEHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHCCCCCC
IQGYEITMDDLIKNSLRMRPDRIFVGEVRGSEAHSLLVAMNTGHDGCSGTLHANSADEAI
CCCEEEEHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCEEECCCHHHHH
IRLINHPMSVPKVMLSSVDFIINQQRIKRNKKTIRRILGVVEIGGSGENITKTELFKYDG
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHEEEECC
VSDSVVKTGICMWEEEVCAIAGITRDELMDDRINRKKVLKYMVNNNINGIKKVGDVIKQY
CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
QENPENVLKHILE
HCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]