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The map label for this gene is yjjV [C]

Identifier: 150399633

GI number: 150399633

Start: 904517

End: 905278

Strand: Reverse

Name: yjjV [C]

Synonym: Mevan_0883

Alternate gene names: 150399633

Gene position: 905278-904517 (Counterclockwise)

Preceding gene: 150399634

Following gene: 150399632

Centisome position: 52.63

GC content: 30.71

Gene sequence:

>762_bases
ATGAATTTTAATAAATTTTTGTATATCGATTCCCACTGCCACATTGAAGATAAGTCATTTAATAAAAATAGGGATGAAGT
CATAAAACGGGCTTTTGATGGTAAGGTTGGAATTGTTACAAGTGGTGCAAGTTTAGGCGGATGCAAAAGAGCATTAGAAC
TTAAAAACCAGTATTCAATATATGCCACACTTGGTTACCATCCTGGAAGGGTTAATGCCGAAGAAAAAGCGATTAATGAA
GTTTATGAGTTTATAAGGTCAAACGAAAAAGAAATTTTAGCAGTTGGGGAAATTGGGCTAGATTTTAATTCGGGAAATAT
TGAAAAACAGGAAATAATATTTAAAAAGTTTTTGGAACTTTCAAAAGAATTAAATAAACCTTCTGTAATTCATGCAAGGG
GGTTAGAAGAGAAATGTTTTAATATTTCAAAAAACGATTCTATTTTAATGTACCACTGCTATGGCGGGTCGCTTGAACTT
GCAAAAAAGCTAATTGACAACGGAAATTATATTTCTATTTCAACAATCATCTGTTTTTCAAACTATCATCAAAAACTTGT
TAAAAATTTGAATCTTGAAAATATCGTGGTTGAAACTGACAGCCCTTACCTTTCACCGATAAAGGGTGAAAAAAATGAGC
CAAACAATGTTGTAAAAGTTATTGAAAAGATATTTGAATTAAAAAAGGATGAATATTCCTTAGATGAAATCACTAAAATT
ATATACGATAACACAAAAAGATTATATCGTATACAGGGGTGA

Upstream 100 bases:

>100_bases
CTCAAAGGTAATTTTATTAAATGCAAGTCTTACAATTATATTGGATATTTTTATAATTTCATTTTTGATAATTTATATGT
AATTTAAAAAGGTGTTTTTA

Downstream 100 bases:

>100_bases
TGCAGTGACTAAATTTACCGCAAAACTAATAACGATTATAAACGTTGAAGAAGCATTAAAATCTCAAGTGGCAGGAACTG
TTCGTGTTAGGGCGTCATAT

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 253; Mature: 253

Protein sequence:

>253_residues
MNFNKFLYIDSHCHIEDKSFNKNRDEVIKRAFDGKVGIVTSGASLGGCKRALELKNQYSIYATLGYHPGRVNAEEKAINE
VYEFIRSNEKEILAVGEIGLDFNSGNIEKQEIIFKKFLELSKELNKPSVIHARGLEEKCFNISKNDSILMYHCYGGSLEL
AKKLIDNGNYISISTIICFSNYHQKLVKNLNLENIVVETDSPYLSPIKGEKNEPNNVVKVIEKIFELKKDEYSLDEITKI
IYDNTKRLYRIQG

Sequences:

>Translated_253_residues
MNFNKFLYIDSHCHIEDKSFNKNRDEVIKRAFDGKVGIVTSGASLGGCKRALELKNQYSIYATLGYHPGRVNAEEKAINE
VYEFIRSNEKEILAVGEIGLDFNSGNIEKQEIIFKKFLELSKELNKPSVIHARGLEEKCFNISKNDSILMYHCYGGSLEL
AKKLIDNGNYISISTIICFSNYHQKLVKNLNLENIVVETDSPYLSPIKGEKNEPNNVVKVIEKIFELKKDEYSLDEITKI
IYDNTKRLYRIQG
>Mature_253_residues
MNFNKFLYIDSHCHIEDKSFNKNRDEVIKRAFDGKVGIVTSGASLGGCKRALELKNQYSIYATLGYHPGRVNAEEKAINE
VYEFIRSNEKEILAVGEIGLDFNSGNIEKQEIIFKKFLELSKELNKPSVIHARGLEEKCFNISKNDSILMYHCYGGSLEL
AKKLIDNGNYISISTIICFSNYHQKLVKNLNLENIVVETDSPYLSPIKGEKNEPNNVVKVIEKIFELKKDEYSLDEITKI
IYDNTKRLYRIQG

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=259, Percent_Identity=28.1853281853282, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI110349734, Length=259, Percent_Identity=28.1853281853282, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI226061853, Length=266, Percent_Identity=27.4436090225564, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI226061614, Length=252, Percent_Identity=26.5873015873016, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI226061595, Length=225, Percent_Identity=27.5555555555556, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI225903424, Length=273, Percent_Identity=25.6410256410256, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI14042943, Length=295, Percent_Identity=25.4237288135593, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI225903439, Length=248, Percent_Identity=25.4032258064516, Blast_Score=73, Evalue=2e-13,
Organism=Escherichia coli, GI87082439, Length=256, Percent_Identity=26.171875, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787342, Length=261, Percent_Identity=29.8850574712644, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI48994985, Length=255, Percent_Identity=28.6274509803922, Blast_Score=107, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI71980746, Length=261, Percent_Identity=27.9693486590038, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17565396, Length=231, Percent_Identity=30.7359307359307, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17559024, Length=284, Percent_Identity=25, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17543026, Length=230, Percent_Identity=26.5217391304348, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24648690, Length=230, Percent_Identity=30, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI221330018, Length=268, Percent_Identity=25.3731343283582, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24586117, Length=268, Percent_Identity=25.3731343283582, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28988; Mature: 28988

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFNKFLYIDSHCHIEDKSFNKNRDEVIKRAFDGKVGIVTSGASLGGCKRALELKNQYSI
CCCCEEEEECCCEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCEEE
YATLGYHPGRVNAEEKAINEVYEFIRSNEKEILAVGEIGLDFNSGNIEKQEIIFKKFLEL
EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHH
SKELNKPSVIHARGLEEKCFNISKNDSILMYHCYGGSLELAKKLIDNGNYISISTIICFS
HHHCCCCCEEEECCCHHHHCCCCCCCCEEEEEEECCCHHHHHHHHCCCCEEEEEEEEEHH
NYHQKLVKNLNLENIVVETDSPYLSPIKGEKNEPNNVVKVIEKIFELKKDEYSLDEITKI
HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
IYDNTKRLYRIQG
HHCCCCCEEEECC
>Mature Secondary Structure
MNFNKFLYIDSHCHIEDKSFNKNRDEVIKRAFDGKVGIVTSGASLGGCKRALELKNQYSI
CCCCEEEEECCCEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCEEE
YATLGYHPGRVNAEEKAINEVYEFIRSNEKEILAVGEIGLDFNSGNIEKQEIIFKKFLEL
EEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHH
SKELNKPSVIHARGLEEKCFNISKNDSILMYHCYGGSLELAKKLIDNGNYISISTIICFS
HHHCCCCCEEEECCCHHHHCCCCCCCCEEEEEEECCCHHHHHHHHCCCCEEEEEEEEEHH
NYHQKLVKNLNLENIVVETDSPYLSPIKGEKNEPNNVVKVIEKIFELKKDEYSLDEITKI
HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
IYDNTKRLYRIQG
HHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]