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The map label for this gene is rpa [H]

Identifier: 150399109

GI number: 150399109

Start: 409420

End: 411345

Strand: Reverse

Name: rpa [H]

Synonym: Mevan_0355

Alternate gene names: 150399109

Gene position: 411345-409420 (Counterclockwise)

Preceding gene: 150399127

Following gene: 150399108

Centisome position: 23.91

GC content: 31.62

Gene sequence:

>1926_bases
ATGAATATCGAAAAGCTAAAACAAAAGATATTAACGAAATTATCCAAAAAAGAACTTGAAAAAAGAGTAAACGAAAAAAT
TGAAGAAAATTCAGGCTTGCTTGGTGAAGAAAGTGCAGTAATGCTTGTTGCACAGGAATTTGGTATTGAAATTACTTACG
ATGACGACGAAGAATATGATTTTTCAATAAAAGACATTCAAGACGGCCAAAAAAATGTTGAAGTATCTGGAAAAATAATT
GAAGTTTCCAATACAAAAGAATTCAGCAAAAAAGATGGAAGTACTGGAAAACTTGCATCGATAACAATTGGAGACAATAC
TGGAACTACTCGACTTACCTTATGGAATGATAAGACTGAGCTTATTGAAGGTTTAAAAAAAGGGGACGTTATAAAAATTG
AAAATGCATTTAGTAGAAAATGGAATGATAAAGTTGAATTAAATAGCGGTTCTGAATTATCAATTGAAAAATTAAAAAAA
TACGATGAATCAAGGTATCCAATTTTGAAAGAAAATTACAGTATTTCTGAACTTTTACCAAATCTTTTGGCAAAAATTAA
TGCGGAAGTAATCTTGGCATACCCTAAAAAGGAATTCAGCAAAAAAGACGGTACAACAGGGCAGTTAAAATCTTTAACTT
TAAAGGACAGTACTGGAAGTATTCGCGTTACACTCTGGAATGAATTAGCAGATTTTGAAGTTAAAAAAGGCGATTACGTG
GAAGTAAAGGGGTATGCAAAACAGGGTTATTCGGGACTTGAATTATCTGCCGACAATATCACCATTATAAGAGAAGGACA
GTTAGAAGAATCTTTAAGTGAAAATTTAAAGATTTCAGAACTTACTGACTTTAAAGGTGAATTTGTAAATGTTTCTGGAA
ATATACTTACAATTTCACCGTCAAGGGAAGTCTCATTTAATGATAGAACCTCTGAAGTTCAGGATTTGTACATTTCAGAT
GATACAGGCCGTGTAAAAATTGCATTTTGGGGCCTTAATAAGGACGTCTTAAAAGAGCTAAATAACGGGGATTATGTAAA
AATTTCAAACTGTAAGTTACGAAATTATAATGATAATTCTGGTGAAAAACGAGCTGATTTAACTTACAGCTACCTTTCAG
AGCTTAAAAAAGATAAAAAATTAAGTAAGGAGATAGAAGAGATAGTAACTCCAATTTCCGAAATATTATCTGGAAAAGCC
AATAAAAATGATGTTACAGTCGTTGGAATGGTTGTTTCAGCTTATCCTATAAATGAATTTAAAAGAAGTAATGGTTCAAC
TGGAAAGGTTAAAAATATTACTATAGATGATAATTCAGGAAGCATTCGAATGTCGCTATGGGATAATTACGCAGAAATGG
CCATTTTAGAAGGCGATATTTTAAAAATAGTTCACGGTTACGTTAAAGAAAGTGGAGAATATATGGATCTTTCAGTAGGC
AGATTTGGGCAGATTTTGGTAAATCCAAAAGGAATATCGGTAAAATCTAACCGGTCATTTATTGTAGATATTGAAGAAGG
CAAATCAACAGAAATTCGTGGAACTGTTGTTGACTTTAGAAAACAGGATTTAATACTTAATTTATGTCCAAACTGTAGGA
AAAAACTTAATGCTTCCGGAAAAGAGTACGTATGTGAGACTTGTGGAACTGTAACTCCAAATGAACTTTTAGTTTCAACA
GTTGCAATAGATGACGGAACTTCAGTTATAAATTGCAGAATTTATGGTCAGAATGTGGAAAAAATTACAGGAATGTCTAA
AAATGAACTTAAATCTTCTAACTTGGATGCACTTTCAAAAATTCTTGGAAGAGACTTTATTTTTTACGGAAGTCCAAATA
TTAGAAACGATGAACTAGAATTTTCTGTTAAAAGTGTGTCTAATATTGATATTAATCGTGAAATAGATGCATTGGAACAG
ATTTAA

Upstream 100 bases:

>100_bases
GTAAAATTCATTACACTAACCTTTGAATCAATTGAAAAATGATATTAAGAATTAGCAAAATATTAATCAAAATTAGTTAA
ACATTCACCGGTGTAAATTT

Downstream 100 bases:

>100_bases
TTACATTTAATTTTTACTTCACGTCTCTTTTTATTTTTTAAGAATTAATAATTTTTTAAGGCATATAACCCAGTAATAAC
CTATATATATTGTAATTTAG

Product: replication factor A

Products: NA

Alternate protein names: RF-A; RP-A; Replication factor A protein 1; Single-stranded DNA-binding protein; mjaSSB [H]

Number of amino acids: Translated: 641; Mature: 641

Protein sequence:

>641_residues
MNIEKLKQKILTKLSKKELEKRVNEKIEENSGLLGEESAVMLVAQEFGIEITYDDDEEYDFSIKDIQDGQKNVEVSGKII
EVSNTKEFSKKDGSTGKLASITIGDNTGTTRLTLWNDKTELIEGLKKGDVIKIENAFSRKWNDKVELNSGSELSIEKLKK
YDESRYPILKENYSISELLPNLLAKINAEVILAYPKKEFSKKDGTTGQLKSLTLKDSTGSIRVTLWNELADFEVKKGDYV
EVKGYAKQGYSGLELSADNITIIREGQLEESLSENLKISELTDFKGEFVNVSGNILTISPSREVSFNDRTSEVQDLYISD
DTGRVKIAFWGLNKDVLKELNNGDYVKISNCKLRNYNDNSGEKRADLTYSYLSELKKDKKLSKEIEEIVTPISEILSGKA
NKNDVTVVGMVVSAYPINEFKRSNGSTGKVKNITIDDNSGSIRMSLWDNYAEMAILEGDILKIVHGYVKESGEYMDLSVG
RFGQILVNPKGISVKSNRSFIVDIEEGKSTEIRGTVVDFRKQDLILNLCPNCRKKLNASGKEYVCETCGTVTPNELLVST
VAIDDGTSVINCRIYGQNVEKITGMSKNELKSSNLDALSKILGRDFIFYGSPNIRNDELEFSVKSVSNIDINREIDALEQ
I

Sequences:

>Translated_641_residues
MNIEKLKQKILTKLSKKELEKRVNEKIEENSGLLGEESAVMLVAQEFGIEITYDDDEEYDFSIKDIQDGQKNVEVSGKII
EVSNTKEFSKKDGSTGKLASITIGDNTGTTRLTLWNDKTELIEGLKKGDVIKIENAFSRKWNDKVELNSGSELSIEKLKK
YDESRYPILKENYSISELLPNLLAKINAEVILAYPKKEFSKKDGTTGQLKSLTLKDSTGSIRVTLWNELADFEVKKGDYV
EVKGYAKQGYSGLELSADNITIIREGQLEESLSENLKISELTDFKGEFVNVSGNILTISPSREVSFNDRTSEVQDLYISD
DTGRVKIAFWGLNKDVLKELNNGDYVKISNCKLRNYNDNSGEKRADLTYSYLSELKKDKKLSKEIEEIVTPISEILSGKA
NKNDVTVVGMVVSAYPINEFKRSNGSTGKVKNITIDDNSGSIRMSLWDNYAEMAILEGDILKIVHGYVKESGEYMDLSVG
RFGQILVNPKGISVKSNRSFIVDIEEGKSTEIRGTVVDFRKQDLILNLCPNCRKKLNASGKEYVCETCGTVTPNELLVST
VAIDDGTSVINCRIYGQNVEKITGMSKNELKSSNLDALSKILGRDFIFYGSPNIRNDELEFSVKSVSNIDINREIDALEQ
I
>Mature_641_residues
MNIEKLKQKILTKLSKKELEKRVNEKIEENSGLLGEESAVMLVAQEFGIEITYDDDEEYDFSIKDIQDGQKNVEVSGKII
EVSNTKEFSKKDGSTGKLASITIGDNTGTTRLTLWNDKTELIEGLKKGDVIKIENAFSRKWNDKVELNSGSELSIEKLKK
YDESRYPILKENYSISELLPNLLAKINAEVILAYPKKEFSKKDGTTGQLKSLTLKDSTGSIRVTLWNELADFEVKKGDYV
EVKGYAKQGYSGLELSADNITIIREGQLEESLSENLKISELTDFKGEFVNVSGNILTISPSREVSFNDRTSEVQDLYISD
DTGRVKIAFWGLNKDVLKELNNGDYVKISNCKLRNYNDNSGEKRADLTYSYLSELKKDKKLSKEIEEIVTPISEILSGKA
NKNDVTVVGMVVSAYPINEFKRSNGSTGKVKNITIDDNSGSIRMSLWDNYAEMAILEGDILKIVHGYVKESGEYMDLSVG
RFGQILVNPKGISVKSNRSFIVDIEEGKSTEIRGTVVDFRKQDLILNLCPNCRKKLNASGKEYVCETCGTVTPNELLVST
VAIDDGTSVINCRIYGQNVEKITGMSKNELKSSNLDALSKILGRDFIFYGSPNIRNDELEFSVKSVSNIDINREIDALEQ
I

Specific function: Probably plays an essential for replication of the chromosome, DNA recombination and repair [H]

COG id: COG1599

COG function: function code L; Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 OB DNA-binding domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR004365
- InterPro:   IPR013955 [H]

Pfam domain/function: PF08646 Rep_fac-A_C; PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 71727; Mature: 71727

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIEKLKQKILTKLSKKELEKRVNEKIEENSGLLGEESAVMLVAQEFGIEITYDDDEEYD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHCEEEEECCCCCCC
FSIKDIQDGQKNVEVSGKIIEVSNTKEFSKKDGSTGKLASITIGDNTGTTRLTLWNDKTE
EEEHCCCCCCCCEEECEEEEEECCCHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCHHH
LIEGLKKGDVIKIENAFSRKWNDKVELNSGSELSIEKLKKYDESRYPILKENYSISELLP
HHHHCCCCCEEEEECHHCCCCCCEEEECCCCCCCHHHHHHCCCCCCCEEECCCCHHHHHH
NLLAKINAEVILAYPKKEFSKKDGTTGQLKSLTLKDSTGSIRVTLWNELADFEVKKGDYV
HHHHHCCCEEEEEECCHHHCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEECCCCEE
EVKGYAKQGYSGLELSADNITIIREGQLEESLSENLKISELTDFKGEFVNVSGNILTISP
EEECHHHCCCCCCEEECCCEEEEECCCHHHHHHCCCEEEEECCCCCCEEEECCCEEEECC
SREVSFNDRTSEVQDLYISDDTGRVKIAFWGLNKDVLKELNNGDYVKISNCKLRNYNDNS
CCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCHHHHHHCCCCCEEEEECEEEECCCCCC
GEKRADLTYSYLSELKKDKKLSKEIEEIVTPISEILSGKANKNDVTVVGMVVSAYPINEF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCHHH
KRSNGSTGKVKNITIDDNSGSIRMSLWDNYAEMAILEGDILKIVHGYVKESGEYMDLSVG
HCCCCCCCEEEEEEEECCCCEEEEEEECCCHHEEEECCHHHHHHHHHHHCCCCEEEEECC
RFGQILVNPKGISVKSNRSFIVDIEEGKSTEIRGTVVDFRKQDLILNLCPNCRKKLNASG
CCCEEEECCCCCEEECCCEEEEEECCCCCCEEEEEEECCCCCCHHECCCHHHHHHHCCCC
KEYVCETCGTVTPNELLVSTVAIDDGTSVINCRIYGQNVEKITGMSKNELKSSNLDALSK
HHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEECCCHHHHCCCCHHHHCCCCHHHHHH
ILGRDFIFYGSPNIRNDELEFSVKSVSNIDINREIDALEQI
HHCCCEEEECCCCCCCCCEEEEEEHHCCCCCCCCHHHHHCC
>Mature Secondary Structure
MNIEKLKQKILTKLSKKELEKRVNEKIEENSGLLGEESAVMLVAQEFGIEITYDDDEEYD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEHHCEEEEECCCCCCC
FSIKDIQDGQKNVEVSGKIIEVSNTKEFSKKDGSTGKLASITIGDNTGTTRLTLWNDKTE
EEEHCCCCCCCCEEECEEEEEECCCHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCHHH
LIEGLKKGDVIKIENAFSRKWNDKVELNSGSELSIEKLKKYDESRYPILKENYSISELLP
HHHHCCCCCEEEEECHHCCCCCCEEEECCCCCCCHHHHHHCCCCCCCEEECCCCHHHHHH
NLLAKINAEVILAYPKKEFSKKDGTTGQLKSLTLKDSTGSIRVTLWNELADFEVKKGDYV
HHHHHCCCEEEEEECCHHHCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCEECCCCEE
EVKGYAKQGYSGLELSADNITIIREGQLEESLSENLKISELTDFKGEFVNVSGNILTISP
EEECHHHCCCCCCEEECCCEEEEECCCHHHHHHCCCEEEEECCCCCCEEEECCCEEEECC
SREVSFNDRTSEVQDLYISDDTGRVKIAFWGLNKDVLKELNNGDYVKISNCKLRNYNDNS
CCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCHHHHHHCCCCCEEEEECEEEECCCCCC
GEKRADLTYSYLSELKKDKKLSKEIEEIVTPISEILSGKANKNDVTVVGMVVSAYPINEF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCHHH
KRSNGSTGKVKNITIDDNSGSIRMSLWDNYAEMAILEGDILKIVHGYVKESGEYMDLSVG
HCCCCCCCEEEEEEEECCCCEEEEEEECCCHHEEEECCHHHHHHHHHHHCCCCEEEEECC
RFGQILVNPKGISVKSNRSFIVDIEEGKSTEIRGTVVDFRKQDLILNLCPNCRKKLNASG
CCCEEEECCCCCEEECCCEEEEEECCCCCCEEEEEEECCCCCCHHECCCHHHHHHHCCCC
KEYVCETCGTVTPNELLVSTVAIDDGTSVINCRIYGQNVEKITGMSKNELKSSNLDALSK
HHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEECCCHHHHCCCCHHHHCCCCHHHHHH
ILGRDFIFYGSPNIRNDELEFSVKSVSNIDINREIDALEQI
HHCCCEEEECCCCCCCCCEEEEEEHHCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087; 9843941 [H]