Definition Methanococcus vannielii SB chromosome, complete genome.
Accession NC_009634
Length 1,720,048

Click here to switch to the map view.

The map label for this gene is yraQ [C]

Identifier: 150399053

GI number: 150399053

Start: 351034

End: 351894

Strand: Reverse

Name: yraQ [C]

Synonym: Mevan_0299

Alternate gene names: 150399053

Gene position: 351894-351034 (Counterclockwise)

Preceding gene: 150399054

Following gene: 150399052

Centisome position: 20.46

GC content: 26.95

Gene sequence:

>861_bases
ATGATACCAATTAATTCGATAGTTATTTCATTAGAACGCTCTTTTAATTTTTTTATTTCTTCATTTCCGTATATTATTTT
AGGGTTTTTAATTTCTGCATACATCAAAATAAAATTAAAGGGAAAGTTAAGGCAAAAGTTTATGCATGTACTTGATAGTT
CAAAAAAATCAATAATAATAGCATCAATAATTGGTGCGGTTTTACCGCTTTGCTCTGCAAGTGGCGTTCCAATTGCAAAT
GTAATGAATAAAAAAGGTGCAAATTTTGGAATTACAATGTCTTTTATTGTTTCGGCATCATCAATTACCCCATTAGGCCT
AATGCTTATATTTTCAATTTTGGGGTCAAAATTAGCAGTTTTACAAATTATTATGTCAATAATTTTGTCATGCATTGTTG
GTATCATATTTTACAATGAAAAAATGCCGTTATATACTTTTGAAGAATTTGATATAAAAAAAGAAGAAAACTATTTGTCA
ATCCTATATAATCAATCCAAAAATTTAATGCCCCCAATAATTTTTGGATTTTTACTATCTGGATTTTTAATGGAGTTTAT
TCCAAAAGATATAATCCTTTATGCCCTTTCAAATAGTCTTATGATGTACTTTTATGTTTCTTTTGCAAGAATTTTTATAT
TTTTATGCCCTCATGCACTAATTCCTTTAATAAATTCTGTAAGCGTTAACGGTGTTTCCAATGGATTAATAATCTCATTT
TTAATTTCAGCACCTACGCTTGGCCTTCCAATGATTTTTGCATTAAATAAATCTTACGGTAAATATATAACTATAAAATA
CATATTATCAGTTATAATTTCCAGTGCATTTCTTGGAATAATTTATGATAGTTTATTTTAG

Upstream 100 bases:

>100_bases
TTCTGGTGTAGGTATGCATGCCCATACGGAACAACGATACAGCTTACAAAAAAAGGAATAACCAAAATAAAACAGCACAA
GTGTAGCAATTGTGGAAAAC

Downstream 100 bases:

>100_bases
TAATTTTTATTTACTTTTAGTAATTTTCAGTATTTATTTTACACTAAATTTCAATCGAAAAAACTATATACTTATTTTTA
AATATATTGTTTAATAGGAG

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MIPINSIVISLERSFNFFISSFPYIILGFLISAYIKIKLKGKLRQKFMHVLDSSKKSIIIASIIGAVLPLCSASGVPIAN
VMNKKGANFGITMSFIVSASSITPLGLMLIFSILGSKLAVLQIIMSIILSCIVGIIFYNEKMPLYTFEEFDIKKEENYLS
ILYNQSKNLMPPIIFGFLLSGFLMEFIPKDIILYALSNSLMMYFYVSFARIFIFLCPHALIPLINSVSVNGVSNGLIISF
LISAPTLGLPMIFALNKSYGKYITIKYILSVIISSAFLGIIYDSLF

Sequences:

>Translated_286_residues
MIPINSIVISLERSFNFFISSFPYIILGFLISAYIKIKLKGKLRQKFMHVLDSSKKSIIIASIIGAVLPLCSASGVPIAN
VMNKKGANFGITMSFIVSASSITPLGLMLIFSILGSKLAVLQIIMSIILSCIVGIIFYNEKMPLYTFEEFDIKKEENYLS
ILYNQSKNLMPPIIFGFLLSGFLMEFIPKDIILYALSNSLMMYFYVSFARIFIFLCPHALIPLINSVSVNGVSNGLIISF
LISAPTLGLPMIFALNKSYGKYITIKYILSVIISSAFLGIIYDSLF
>Mature_286_residues
MIPINSIVISLERSFNFFISSFPYIILGFLISAYIKIKLKGKLRQKFMHVLDSSKKSIIIASIIGAVLPLCSASGVPIAN
VMNKKGANFGITMSFIVSASSITPLGLMLIFSILGSKLAVLQIIMSIILSCIVGIIFYNEKMPLYTFEEFDIKKEENYLS
ILYNQSKNLMPPIIFGFLLSGFLMEFIPKDIILYALSNSLMMYFYVSFARIFIFLCPHALIPLINSVSVNGVSNGLIISF
LISAPTLGLPMIFALNKSYGKYITIKYILSVIISSAFLGIIYDSLF

Specific function: Unknown

COG id: COG0701

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31783; Mature: 31783

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPINSIVISLERSFNFFISSFPYIILGFLISAYIKIKLKGKLRQKFMHVLDSSKKSIII
CCCHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHCCCCCHHHH
ASIIGAVLPLCSASGVPIANVMNKKGANFGITMSFIVSASSITPLGLMLIFSILGSKLAV
HHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEHHHHHHHCCCCHHHHHHHHHHHCCHHHH
LQIIMSIILSCIVGIIFYNEKMPLYTFEEFDIKKEENYLSILYNQSKNLMPPIIFGFLLS
HHHHHHHHHHHHHHHHHCCCCCCEEEHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHH
GFLMEFIPKDIILYALSNSLMMYFYVSFARIFIFLCPHALIPLINSVSVNGVSNGLIISF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
LISAPTLGLPMIFALNKSYGKYITIKYILSVIISSAFLGIIYDSLF
HHHCCCCCCHHHEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIPINSIVISLERSFNFFISSFPYIILGFLISAYIKIKLKGKLRQKFMHVLDSSKKSIII
CCCHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHCCCCCHHHH
ASIIGAVLPLCSASGVPIANVMNKKGANFGITMSFIVSASSITPLGLMLIFSILGSKLAV
HHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEHHHHHHHCCCCHHHHHHHHHHHCCHHHH
LQIIMSIILSCIVGIIFYNEKMPLYTFEEFDIKKEENYLSILYNQSKNLMPPIIFGFLLS
HHHHHHHHHHHHHHHHHCCCCCCEEEHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHH
GFLMEFIPKDIILYALSNSLMMYFYVSFARIFIFLCPHALIPLINSVSVNGVSNGLIISF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
LISAPTLGLPMIFALNKSYGKYITIKYILSVIISSAFLGIIYDSLF
HHHCCCCCCHHHEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA