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The map label for this gene is ybfI [H]

Identifier: 150398740

GI number: 150398740

Start: 3762428

End: 3763237

Strand: Reverse

Name: ybfI [H]

Synonym: Smed_3557

Alternate gene names: 150398740

Gene position: 3763237-3762428 (Counterclockwise)

Preceding gene: 150398741

Following gene: 150398739

Centisome position: 99.51

GC content: 63.7

Gene sequence:

>810_bases
ATGCCAAAAGGGCATTTCAGGGTACTTCCGCGTCGCATTGCGGGCATCGATGTGGTCGAGGCAACGACGAACCACAGTTT
CGCCCGCCATACGCACGAACAATTCGGCATCGGCCTGGTCCATGCCGGTGCGCAAACGTCGCTGAGCGGCCGCGGAACCG
TCGCGGCGGAAGCCGGCGACGTGATCACAGTCAATCCCGGCGAGGTCCATGACGGAGCGCCGATTGGCGATCTCGGACGA
TCCTGGCGAATGCTCTACCTCGATCCGCCGCTTGTGGCCGCGCTCGTCAATGACGTCACCGAAGGGAAAAGATCGAGTTG
CGAATTCTCGGACCCGGTGATCAGAAGCCCCACCCTTGCAGGCCGCTTTCGGGCGATCTTCGCTGCTGCCATAGCGGTCG
ACAGCCCCGGGTCGACGCTTTGCTGGGATGAACTCGCCGTCACTCTGTTCGCGGAGGCGATGCAGCTTGCCCCGGCACGT
GCTCCGGCCAGCGTGTCCAGGTCGGTCGCCAGGGCCGTAAACCTGATCGACCACGATCCGCTTGCGTCCGTGACGCTCGA
GGACCTTGCCCGCGAGAGCGGATTGAGCCGCTTCCAGCTCGTGCGCGGCTTTGCCAAGTCTACGGGTCTCACACCTCATG
CCTATCTCATCCAGCGTCGGATGGACATCGTCCGGCGGCTGATTGCCGGGGGCACGCCACTCGCTGAAGCGGCAACTGCC
GGTGGCTTCGCCGACCAGAGCCACATGACGCGCGTCTTCGTGCGCAAATACGGCTTCTCGCCCGGTGCCTATGCGCAGGC
AATGAACTAA

Upstream 100 bases:

>100_bases
TTTGTTGTTCCGCAAGCCCGGGAAACCGCTACGCGCTTTTCCCGGTATTGCTCTATAACAGCATCGAGGCTCAACGAAGA
ACGGGGGCGGCGAGCGGAAC

Downstream 100 bases:

>100_bases
CCTCAGCATCTGCAATTTCGTACAAGACCGCGCGATGCGGATCGTTTCTTCTGCCGCCATCTTCAATCCGGACGGCGGCA
GAATGTCGAAGCAAGCTCAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MPKGHFRVLPRRIAGIDVVEATTNHSFARHTHEQFGIGLVHAGAQTSLSGRGTVAAEAGDVITVNPGEVHDGAPIGDLGR
SWRMLYLDPPLVAALVNDVTEGKRSSCEFSDPVIRSPTLAGRFRAIFAAAIAVDSPGSTLCWDELAVTLFAEAMQLAPAR
APASVSRSVARAVNLIDHDPLASVTLEDLARESGLSRFQLVRGFAKSTGLTPHAYLIQRRMDIVRRLIAGGTPLAEAATA
GGFADQSHMTRVFVRKYGFSPGAYAQAMN

Sequences:

>Translated_269_residues
MPKGHFRVLPRRIAGIDVVEATTNHSFARHTHEQFGIGLVHAGAQTSLSGRGTVAAEAGDVITVNPGEVHDGAPIGDLGR
SWRMLYLDPPLVAALVNDVTEGKRSSCEFSDPVIRSPTLAGRFRAIFAAAIAVDSPGSTLCWDELAVTLFAEAMQLAPAR
APASVSRSVARAVNLIDHDPLASVTLEDLARESGLSRFQLVRGFAKSTGLTPHAYLIQRRMDIVRRLIAGGTPLAEAATA
GGFADQSHMTRVFVRKYGFSPGAYAQAMN
>Mature_268_residues
PKGHFRVLPRRIAGIDVVEATTNHSFARHTHEQFGIGLVHAGAQTSLSGRGTVAAEAGDVITVNPGEVHDGAPIGDLGRS
WRMLYLDPPLVAALVNDVTEGKRSSCEFSDPVIRSPTLAGRFRAIFAAAIAVDSPGSTLCWDELAVTLFAEAMQLAPARA
PASVSRSVARAVNLIDHDPLASVTLEDLARESGLSRFQLVRGFAKSTGLTPHAYLIQRRMDIVRRLIAGGTPLAEAATAG
GFADQSHMTRVFVRKYGFSPGAYAQAMN

Specific function: Positive Regulator Of Tyna/Maoa And Feab/Pada, The Genes For 2-Phenylethylamine Catabolism. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 28653; Mature: 28522

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKGHFRVLPRRIAGIDVVEATTNHSFARHTHEQFGIGLVHAGAQTSLSGRGTVAAEAGD
CCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCEEEECCCC
VITVNPGEVHDGAPIGDLGRSWRMLYLDPPLVAALVNDVTEGKRSSCEFSDPVIRSPTLA
EEEECCCCCCCCCCHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
GRFRAIFAAAIAVDSPGSTLCWDELAVTLFAEAMQLAPARAPASVSRSVARAVNLIDHDP
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
LASVTLEDLARESGLSRFQLVRGFAKSTGLTPHAYLIQRRMDIVRRLIAGGTPLAEAATA
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHC
GGFADQSHMTRVFVRKYGFSPGAYAQAMN
CCCCCHHHHHHHHHHHHCCCCCCHHHCCC
>Mature Secondary Structure 
PKGHFRVLPRRIAGIDVVEATTNHSFARHTHEQFGIGLVHAGAQTSLSGRGTVAAEAGD
CCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCEEEECCCC
VITVNPGEVHDGAPIGDLGRSWRMLYLDPPLVAALVNDVTEGKRSSCEFSDPVIRSPTLA
EEEECCCCCCCCCCHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
GRFRAIFAAAIAVDSPGSTLCWDELAVTLFAEAMQLAPARAPASVSRSVARAVNLIDHDP
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
LASVTLEDLARESGLSRFQLVRGFAKSTGLTPHAYLIQRRMDIVRRLIAGGTPLAEAATA
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHC
GGFADQSHMTRVFVRKYGFSPGAYAQAMN
CCCCCHHHHHHHHHHHHCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]