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The map label for this gene is ybjT [H]

Identifier: 150398722

GI number: 150398722

Start: 3745261

End: 3746241

Strand: Reverse

Name: ybjT [H]

Synonym: Smed_3538

Alternate gene names: 150398722

Gene position: 3746241-3745261 (Counterclockwise)

Preceding gene: 150398723

Following gene: 150398721

Centisome position: 99.06

GC content: 62.39

Gene sequence:

>981_bases
ATGACCTTGTCCAATCTTCCGCCGCTGGTGACGATTTTCGGCGGATCCGGATTTGTCGGCCGTCATGTGGTGCGCGCACT
TGCCAAACGCGGCTACCGTATTCGCGTCGCCGTTCGCCGTCCGGATCTTGCCGGCCACCTGCAACCGCTCGGCAATGTCG
GGCAGATCTCATTCGTTCAGGCCAACCTACGCTATCGCAACTCGGTCGATCGCGCGGTCGATGGCGCCGATCATGTGATC
AATTGCGTCGGCGTACTCTTCGAAAACGGCCGCAACACCTTCGACGCGGTTCAGGATTTCGGTGCCCGGGCGGTCGCCGA
GGCGGCGCGGGCGACGGGCGCAACTCTGACCCATATCTCGGCAATTGGTGCCGACGCGAGGTCCGACTCGAGCTATGCAC
GGACGAAGGGGCGCGCAGAGGCAGCGATCCTGGAGATACTTCCCACCGCCGTGATCCTTCGCCCCTCGATCATCTTTGGC
CCCGAAGACGGCTTTTTCAACAAATTCGCCGAAATGGCTCGGTTCTCGCCGGTCCTGCCGCTCATCGGCGGCGGCAATAC
CAGGTTTCAGCCGGTTTACGTCACGGACGTCGCCGAGGCTGTGGCCCGCTCCGTCGACGGCAAGCTCGCGGGTGGCACGA
TCTACGAACTCGGTGGACCGCAGGTGCTCTCGTTCCGCGAATGTCTCGATATCATGCTGAAGACGATCGACCGCAAGCGC
TCCTTCGTCTCGCTCCCCTTCGGCATCGCCTCTCTGATGGGCAGCGTCGCTTCGCTGGTGCCGTTCATCGAACCGCCGCT
CACGGCCGATCAGGTCGTGTTGCTGAAATCGGACAATGTCGTTTCCGCAATGGCTGAAACTGAAGGGCGCACGTTTGCCG
GTATAGGCATCGAGCCGACAATGCTCGAGTCGATCCTGCCGACCTATCTCGTACGCTATCGCCCGCACGGGCAATATACC
CGCACCGGCCGCGCCGCCTGA

Upstream 100 bases:

>100_bases
CGAAGGAGGCCTCCGAAGCGCGCGGAATGGCCTTCACCTCGCTCGCCGCTTGGGCTATGTAGCAAGCAATTCTTCCATTG
GCATCAGGAGTGCGTTTCTC

Downstream 100 bases:

>100_bases
GCCGCGGCTCCGCTGCGAACGCACTTACGCCTCCGGTTCGCCGGCGGCTTTTTTGCGGCCCCCACTGTGCCTATTTAGCA
ACAGCGTTGCAGTTCTGCAG

Product: NADH dehydrogenase (ubiquinone)

Products: NAD+; ubiquinol

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MTLSNLPPLVTIFGGSGFVGRHVVRALAKRGYRIRVAVRRPDLAGHLQPLGNVGQISFVQANLRYRNSVDRAVDGADHVI
NCVGVLFENGRNTFDAVQDFGARAVAEAARATGATLTHISAIGADARSDSSYARTKGRAEAAILEILPTAVILRPSIIFG
PEDGFFNKFAEMARFSPVLPLIGGGNTRFQPVYVTDVAEAVARSVDGKLAGGTIYELGGPQVLSFRECLDIMLKTIDRKR
SFVSLPFGIASLMGSVASLVPFIEPPLTADQVVLLKSDNVVSAMAETEGRTFAGIGIEPTMLESILPTYLVRYRPHGQYT
RTGRAA

Sequences:

>Translated_326_residues
MTLSNLPPLVTIFGGSGFVGRHVVRALAKRGYRIRVAVRRPDLAGHLQPLGNVGQISFVQANLRYRNSVDRAVDGADHVI
NCVGVLFENGRNTFDAVQDFGARAVAEAARATGATLTHISAIGADARSDSSYARTKGRAEAAILEILPTAVILRPSIIFG
PEDGFFNKFAEMARFSPVLPLIGGGNTRFQPVYVTDVAEAVARSVDGKLAGGTIYELGGPQVLSFRECLDIMLKTIDRKR
SFVSLPFGIASLMGSVASLVPFIEPPLTADQVVLLKSDNVVSAMAETEGRTFAGIGIEPTMLESILPTYLVRYRPHGQYT
RTGRAA
>Mature_325_residues
TLSNLPPLVTIFGGSGFVGRHVVRALAKRGYRIRVAVRRPDLAGHLQPLGNVGQISFVQANLRYRNSVDRAVDGADHVIN
CVGVLFENGRNTFDAVQDFGARAVAEAARATGATLTHISAIGADARSDSSYARTKGRAEAAILEILPTAVILRPSIIFGP
EDGFFNKFAEMARFSPVLPLIGGGNTRFQPVYVTDVAEAVARSVDGKLAGGTIYELGGPQVLSFRECLDIMLKTIDRKRS
FVSLPFGIASLMGSVASLVPFIEPPLTADQVVLLKSDNVVSAMAETEGRTFAGIGIEPTMLESILPTYLVRYRPHGQYTR
TGRAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI6681764, Length=310, Percent_Identity=31.2903225806452, Blast_Score=138, Evalue=6e-33,
Organism=Escherichia coli, GI87081793, Length=287, Percent_Identity=25.0871080139373, Blast_Score=71, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17556106, Length=238, Percent_Identity=33.1932773109244, Blast_Score=125, Evalue=4e-29,
Organism=Drosophila melanogaster, GI24667554, Length=322, Percent_Identity=29.8136645962733, Blast_Score=115, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021295
- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF11066 DUF2867; PF01370 Epimerase [H]

EC number: 1.6.5.3; 1.6.99.3

Molecular weight: Translated: 34960; Mature: 34828

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSNLPPLVTIFGGSGFVGRHVVRALAKRGYRIRVAVRRPDLAGHLQPLGNVGQISFVQ
CCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHCCCCCCCCEEEEE
ANLRYRNSVDRAVDGADHVINCVGVLFENGRNTFDAVQDFGARAVAEAARATGATLTHIS
ECCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
AIGADARSDSSYARTKGRAEAAILEILPTAVILRPSIIFGPEDGFFNKFAEMARFSPVLP
HHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHCCCCCE
LIGGGNTRFQPVYVTDVAEAVARSVDGKLAGGTIYELGGPQVLSFRECLDIMLKTIDRKR
EECCCCCEEEEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCEECHHHHHHHHHHHHHHHC
SFVSLPFGIASLMGSVASLVPFIEPPLTADQVVLLKSDNVVSAMAETEGRTFAGIGIEPT
CEEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHCCCCEEEECCCCHH
MLESILPTYLVRYRPHGQYTRTGRAA
HHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TLSNLPPLVTIFGGSGFVGRHVVRALAKRGYRIRVAVRRPDLAGHLQPLGNVGQISFVQ
CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHCCCCCCCCEEEEE
ANLRYRNSVDRAVDGADHVINCVGVLFENGRNTFDAVQDFGARAVAEAARATGATLTHIS
ECCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
AIGADARSDSSYARTKGRAEAAILEILPTAVILRPSIIFGPEDGFFNKFAEMARFSPVLP
HHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHCCCCCE
LIGGGNTRFQPVYVTDVAEAVARSVDGKLAGGTIYELGGPQVLSFRECLDIMLKTIDRKR
EECCCCCEEEEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCEECHHHHHHHHHHHHHHHC
SFVSLPFGIASLMGSVASLVPFIEPPLTADQVVLLKSDNVVSAMAETEGRTFAGIGIEPT
CEEECCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHCCCCEEEECCCCHH
MLESILPTYLVRYRPHGQYTRTGRAA
HHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]