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The map label for this gene is yjjM [H]

Identifier: 150398416

GI number: 150398416

Start: 3398833

End: 3399711

Strand: Reverse

Name: yjjM [H]

Synonym: Smed_3224

Alternate gene names: 150398416

Gene position: 3399711-3398833 (Counterclockwise)

Preceding gene: 150398423

Following gene: 150398413

Centisome position: 89.89

GC content: 61.89

Gene sequence:

>879_bases
ATGGCGAAGCAGAACACCGTATTCAAGGATGCTTTCAACCGCTGCCTCGAGCTGTTCGCAGAGACCGCCACTCTTCCTTC
CGAACCGGAGCTGGGCCAGGCGCTCGGCGTCAGCCGTACGACCGTTCGCGCCATACTGACGCGCTGCGAGGAACTGAGCC
TGATTGCCTGGGACAAGCGCAGCAAGACAGTGCTCCGAAACCCTGAGCCCTCGGACTATTTTCCGAGCGAGGAGACCGAT
TCACTCGCCGAGAGGATCGAGCGCAGCTTTATGCGCCGGATTCTTGCGGGCGGCGCCGAGCCCGGCATGCAGATCAACGA
ACTGGAGCTTGCGCGCGAGATCGGCACGGGGACCACCAGCGTTCGCGAATTCCTGATCCGCTTCAGCCGGTTCGGCCTGA
TCGAGAAGCGGCCGAACAGTCATTGGGTCCTGAAAGGGTTCACGCGCGAGTTCGCGCTCGAACTGACGGAAGTGAGGGAG
ATGTTCGAGCTGCGTTCGGCCGCCCGATTCGTCTCCCTTCCCGAAGAGGATCCGGCCTGGGAGGAACTGAGGACGATCGA
GGCGGTGCACCGCGAGATCCTCGCCGCCATCGACGAGCGTTACGGGGAATTTTCCGAACTCGACGAACGCCTCCACCTGC
TGGTGCACAAGTCGTCGAGCAACCGCTTCATCATCGACTTCTACGATGTCATCGCCATCGTCTTCCACTATCATTACCAG
TGGAACAAGGCGAATGCGCGCGAGCGCAACGCCCGTGCGCTCGAAGAGCATCTCGACTATATCGCTGCGCTGCAGTCGCG
GGATCCCATGTCGGCCGAGCAGGCCTGCCGGCGGCATCTGAAGTCGGCGCGGGAGACACTGCTGCAATCGATCCCGTGA

Upstream 100 bases:

>100_bases
GACAGAAGTTCGTCAATGGCTATTATGGCTCTGGCGGGTCGTTGCCGAACGAAAGCTTCGACTGCCTTCACGACCAACCC
GAAACGGGACAGACCCAGCC

Downstream 100 bases:

>100_bases
TCAGTAGCCGGCTTCGCGCCGGGCCGGTCCAGCTTCTCCAAGGAACTCCAGGCGCAGCCGCTCCGAGGCGCTGACGAGCA
GCGTCACGTCGGTGCCGATG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MAKQNTVFKDAFNRCLELFAETATLPSEPELGQALGVSRTTVRAILTRCEELSLIAWDKRSKTVLRNPEPSDYFPSEETD
SLAERIERSFMRRILAGGAEPGMQINELELAREIGTGTTSVREFLIRFSRFGLIEKRPNSHWVLKGFTREFALELTEVRE
MFELRSAARFVSLPEEDPAWEELRTIEAVHREILAAIDERYGEFSELDERLHLLVHKSSSNRFIIDFYDVIAIVFHYHYQ
WNKANARERNARALEEHLDYIAALQSRDPMSAEQACRRHLKSARETLLQSIP

Sequences:

>Translated_292_residues
MAKQNTVFKDAFNRCLELFAETATLPSEPELGQALGVSRTTVRAILTRCEELSLIAWDKRSKTVLRNPEPSDYFPSEETD
SLAERIERSFMRRILAGGAEPGMQINELELAREIGTGTTSVREFLIRFSRFGLIEKRPNSHWVLKGFTREFALELTEVRE
MFELRSAARFVSLPEEDPAWEELRTIEAVHREILAAIDERYGEFSELDERLHLLVHKSSSNRFIIDFYDVIAIVFHYHYQ
WNKANARERNARALEEHLDYIAALQSRDPMSAEQACRRHLKSARETLLQSIP
>Mature_291_residues
AKQNTVFKDAFNRCLELFAETATLPSEPELGQALGVSRTTVRAILTRCEELSLIAWDKRSKTVLRNPEPSDYFPSEETDS
LAERIERSFMRRILAGGAEPGMQINELELAREIGTGTTSVREFLIRFSRFGLIEKRPNSHWVLKGFTREFALELTEVREM
FELRSAARFVSLPEEDPAWEELRTIEAVHREILAAIDERYGEFSELDERLHLLVHKSSSNRFIIDFYDVIAIVFHYHYQW
NKANARERNARALEEHLDYIAALQSRDPMSAEQACRRHLKSARETLLQSIP

Specific function: May be a positive transcriptional regulator for yjjM and/or yjjN. Is essential for growth on L-galactonate as the sole carbon source [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI48995005, Length=297, Percent_Identity=31.986531986532, Blast_Score=178, Evalue=4e-46,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 33831; Mature: 33700

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQNTVFKDAFNRCLELFAETATLPSEPELGQALGVSRTTVRAILTRCEELSLIAWDKR
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHEEECCC
SKTVLRNPEPSDYFPSEETDSLAERIERSFMRRILAGGAEPGMQINELELAREIGTGTTS
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHH
VREFLIRFSRFGLIEKRPNSHWVLKGFTREFALELTEVREMFELRSAARFVSLPEEDPAW
HHHHHHHHHHHCCHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
EELRTIEAVHREILAAIDERYGEFSELDERLHLLVHKSSSNRFIIDFYDVIAIVFHYHYQ
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEECCCCEEEEHHHHHHHHHHHHHHH
WNKANARERNARALEEHLDYIAALQSRDPMSAEQACRRHLKSARETLLQSIP
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKQNTVFKDAFNRCLELFAETATLPSEPELGQALGVSRTTVRAILTRCEELSLIAWDKR
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHEEECCC
SKTVLRNPEPSDYFPSEETDSLAERIERSFMRRILAGGAEPGMQINELELAREIGTGTTS
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHH
VREFLIRFSRFGLIEKRPNSHWVLKGFTREFALELTEVREMFELRSAARFVSLPEEDPAW
HHHHHHHHHHHCCHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
EELRTIEAVHREILAAIDERYGEFSELDERLHLLVHKSSSNRFIIDFYDVIAIVFHYHYQ
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEECCCCEEEEHHHHHHHHHHHHHHH
WNKANARERNARALEEHLDYIAALQSRDPMSAEQACRRHLKSARETLLQSIP
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]