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The map label for this gene is secB [H]

Identifier: 150398406

GI number: 150398406

Start: 3388950

End: 3389456

Strand: Reverse

Name: secB [H]

Synonym: Smed_3214

Alternate gene names: 150398406

Gene position: 3389456-3388950 (Counterclockwise)

Preceding gene: 150398407

Following gene: 150398400

Centisome position: 89.62

GC content: 62.13

Gene sequence:

>507_bases
ATGACGACTGATTCCGCATCCAACGGCAACGGCAGTGCCCAACAGCCAAGCCCGTCGCTCAACATCCTGGCCCAGTATGT
CAAGGACCTCTCCTTCGAGAACCCCGGCGCACCCCGCTCGCTCCAGGCCCGCGACCGCTCTCCGGCGATCAACATCAATG
TCAACGTCAACGCCAATCCGCTTGCGGAGAATGATTTCGATGTCGTCCTGTCGCTGAGCGCCCAGGCGAAGGACGGCGAC
AAGATGCTGTTCAACGTCGAGCTCGCCTATGGCGGCGTCTTCCGTGTCGCCGGCTTCCCGCAGGAACACATGCTGCCGCT
GCTCTTCATCGAGTGCCCGCGCCTGCTGTTTCCCTTCGCGCGCCAGATCGTAGCCGATGCCACCCGCAATGGCGGCTTCC
CGCCCCTGATGATCGACCCCATCGATTTCGCGCAGATGTTTGCCCAGCGCATGGCAGAGGAAAAGGTGCGCGCGCAGGTC
GCTAACACCAACGATACGGCTAACTGA

Upstream 100 bases:

>100_bases
CTCGCTAAATCGCCTTGCCTCGGAGCCGGGCCACGAGGGTTGTAAGCCAAAGTCCGAGATGCTAGATGGCCTCACCATTT
CGAAGTCCGAGGAAACTCTT

Downstream 100 bases:

>100_bases
CCGCTTTGAAATATCCGCAAAACCCGGCTCAGCGAGCCGGGTTTTTTGTATCGTGCCCGCACAACCAGTTCGCAAATAGG
AACGGTGCTCCACCGTTTTG

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MTTDSASNGNGSAQQPSPSLNILAQYVKDLSFENPGAPRSLQARDRSPAININVNVNANPLAENDFDVVLSLSAQAKDGD
KMLFNVELAYGGVFRVAGFPQEHMLPLLFIECPRLLFPFARQIVADATRNGGFPPLMIDPIDFAQMFAQRMAEEKVRAQV
ANTNDTAN

Sequences:

>Translated_168_residues
MTTDSASNGNGSAQQPSPSLNILAQYVKDLSFENPGAPRSLQARDRSPAININVNVNANPLAENDFDVVLSLSAQAKDGD
KMLFNVELAYGGVFRVAGFPQEHMLPLLFIECPRLLFPFARQIVADATRNGGFPPLMIDPIDFAQMFAQRMAEEKVRAQV
ANTNDTAN
>Mature_167_residues
TTDSASNGNGSAQQPSPSLNILAQYVKDLSFENPGAPRSLQARDRSPAININVNVNANPLAENDFDVVLSLSAQAKDGDK
MLFNVELAYGGVFRVAGFPQEHMLPLLFIECPRLLFPFARQIVADATRNGGFPPLMIDPIDFAQMFAQRMAEEKVRAQVA
NTNDTAN

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family [H]

Homologues:

Organism=Escherichia coli, GI1790038, Length=129, Percent_Identity=32.5581395348837, Blast_Score=93, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003708 [H]

Pfam domain/function: PF02556 SecB [H]

EC number: NA

Molecular weight: Translated: 18297; Mature: 18166

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTDSASNGNGSAQQPSPSLNILAQYVKDLSFENPGAPRSLQARDRSPAININVNVNANP
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
LAENDFDVVLSLSAQAKDGDKMLFNVELAYGGVFRVAGFPQEHMLPLLFIECPRLLFPFA
CCCCCCEEEEEECCCCCCCCEEEEEEEECCCCEEEECCCCHHHCCHHHHHHCHHHHHHHH
RQIVADATRNGGFPPLMIDPIDFAQMFAQRMAEEKVRAQVANTNDTAN
HHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TTDSASNGNGSAQQPSPSLNILAQYVKDLSFENPGAPRSLQARDRSPAININVNVNANP
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
LAENDFDVVLSLSAQAKDGDKMLFNVELAYGGVFRVAGFPQEHMLPLLFIECPRLLFPFA
CCCCCCEEEEEECCCCCCCCEEEEEEEECCCCEEEECCCCHHHCCHHHHHHCHHHHHHHH
RQIVADATRNGGFPPLMIDPIDFAQMFAQRMAEEKVRAQVANTNDTAN
HHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]