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The map label for this gene is 150398399

Identifier: 150398399

GI number: 150398399

Start: 3383037

End: 3383579

Strand: Reverse

Name: 150398399

Synonym: Smed_3207

Alternate gene names: NA

Gene position: 3383579-3383037 (Counterclockwise)

Preceding gene: 150398400

Following gene: 150398398

Centisome position: 89.47

GC content: 57.83

Gene sequence:

>543_bases
ATGAGAGGCGAACGTCAAACCGACCGCGGCCCCGGCAGACGGGCGCGGTTTCGGGCTGCTATCGCGCTTTCCGCCTTTAC
GGCCTTGCTGATCGGCCTCTTCGCTTGGCAGCCGGACGATTTCTATCTTTGGATCAAGGCGCTTCACGTCATCGCGGTGA
TCTCATGGATGGCGGCCCTTCTCTACATGCCGCGCCTCTTCATCTACCACACCGACGCCGCACCGGGATCGGAGCAGTCG
GAGACCTTCAAGATGATGGAACAGCGGTTGCTCAAGGTCATCATGAACCCGGCAATGATGATCTCCTGGGTGCTTGGTCT
TTACCTCGCCTGGGGCGTTTACGGTTTTCACGGGGGGTGGCTCCATGCGAAGATTTTCTGCGTTTTTCTGCTGACCATGG
TACATGTGCATTTCAGCCGCGCAGTCAAAGTCTTCCAGCGAGACGAGAATCGCCGGGATGCCCGCTACTGGAGGCTGATG
AACGAGGCCCCGACCCTGCTGATGATCGTCATTGTCATCCTCGTTGTCGTGAAGCCATTTTGA

Upstream 100 bases:

>100_bases
TCGGGCAAGGGCCGCTGATCTTCAATCTGGGCCACGGCATCACGCCGGACGCGGATCCGGAGCATGTCGCCGCGCTTGTG
TCTCGCGTCCGAGGACGCCG

Downstream 100 bases:

>100_bases
ATTCAATCGATTCGCAGCTGCAATAGTTGCAGCTAATTTGCAGCGACCCCTTGCGGCGTTTCACGTGAATCGCTATTTTC
CCTCATCTCCTTCTCCCCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MRGERQTDRGPGRRARFRAAIALSAFTALLIGLFAWQPDDFYLWIKALHVIAVISWMAALLYMPRLFIYHTDAAPGSEQS
ETFKMMEQRLLKVIMNPAMMISWVLGLYLAWGVYGFHGGWLHAKIFCVFLLTMVHVHFSRAVKVFQRDENRRDARYWRLM
NEAPTLLMIVIVILVVVKPF

Sequences:

>Translated_180_residues
MRGERQTDRGPGRRARFRAAIALSAFTALLIGLFAWQPDDFYLWIKALHVIAVISWMAALLYMPRLFIYHTDAAPGSEQS
ETFKMMEQRLLKVIMNPAMMISWVLGLYLAWGVYGFHGGWLHAKIFCVFLLTMVHVHFSRAVKVFQRDENRRDARYWRLM
NEAPTLLMIVIVILVVVKPF
>Mature_180_residues
MRGERQTDRGPGRRARFRAAIALSAFTALLIGLFAWQPDDFYLWIKALHVIAVISWMAALLYMPRLFIYHTDAAPGSEQS
ETFKMMEQRLLKVIMNPAMMISWVLGLYLAWGVYGFHGGWLHAKIFCVFLLTMVHVHFSRAVKVFQRDENRRDARYWRLM
NEAPTLLMIVIVILVVVKPF

Specific function: Unknown

COG id: COG1981

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0093 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014351
- InterPro:   IPR008457
- InterPro:   IPR005265 [H]

Pfam domain/function: PF05425 CopD; PF03653 UPF0093 [H]

EC number: NA

Molecular weight: Translated: 20947; Mature: 20947

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGERQTDRGPGRRARFRAAIALSAFTALLIGLFAWQPDDFYLWIKALHVIAVISWMAAL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LYMPRLFIYHTDAAPGSEQSETFKMMEQRLLKVIMNPAMMISWVLGLYLAWGVYGFHGGW
HHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHH
LHAKIFCVFLLTMVHVHFSRAVKVFQRDENRRDARYWRLMNEAPTLLMIVIVILVVVKPF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRGERQTDRGPGRRARFRAAIALSAFTALLIGLFAWQPDDFYLWIKALHVIAVISWMAAL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LYMPRLFIYHTDAAPGSEQSETFKMMEQRLLKVIMNPAMMISWVLGLYLAWGVYGFHGGW
HHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHH
LHAKIFCVFLLTMVHVHFSRAVKVFQRDENRRDARYWRLMNEAPTLLMIVIVILVVVKPF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]