| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
Click here to switch to the map view.
The map label for this gene is 150398387
Identifier: 150398387
GI number: 150398387
Start: 3367525
End: 3368223
Strand: Direct
Name: 150398387
Synonym: Smed_3195
Alternate gene names: NA
Gene position: 3367525-3368223 (Clockwise)
Preceding gene: 150398385
Following gene: 150398390
Centisome position: 89.04
GC content: 61.95
Gene sequence:
>699_bases ATGGCTCAGCAACTGCTTATGCCCAAGGCAACAGCCGTCTGGCTGGTTGACAACACCGCACTCTCGTTCGACCAGATCGC GCAGTTCTGCAAACTGCACCCGCTCGAGGTCAAGGCGATTGCCGACGGTGAATCGGCGCAGGGCATCAAGGGGCTCGATC CAATCGCAACTGGGCAGCTTTCGCGCGACGAGATCGCCCGCGGCGAGGCGAACTCCAATCACAAGCTCAAGCTTTCGGAG CCAAAGGTCCGCGTCCCGGACTCCAAGCGCAAGGGTCCGCGCTACACGCCGGTCTCAAAGCGCCAGGACCGCCCGAATGC CATCCTGTGGCTGGTTCGCAACCATCCAGAACTCAAGGATGCACAGATCTCGCGTCTGGTCGGAACGACGAAGGCGACAA TCGAGCAGATTCGCGAGCGTACCCACTGGAACTCCGCCAACCTGACGCCGATGGACCCGGTGACGCTTGGCCTCTGCTCG CAGATCGACCTGGATCTCGAGGTCGAACGCGCTGCCAAGGGCCGCCCGCTTCCCTCGGCAGCCGAAACCGGCGCAACGCT CGAATCCGCACAGGAGACCGAAAAGCTCAGCTTCGGACAGGAGCGCGAAGAGGAGAAGGAAATCGACGCCGATGCCGTCT TCGCCAAGCTCAAGTCGCTGAAGTCGGACCGCAAGGACGACGAGGACGACGACTATTGA
Upstream 100 bases:
>100_bases ATTTCGAGACAAGAACGGTATAGAACCGCCAATTCCCGGAAATCAGTGGTAGACTCCACGGCCCGCGACGCCGGCGCGGA CGGACAAAAGGACTATATCC
Downstream 100 bases:
>100_bases TCGATTCGTCGGCGATGACGATTAAAGAACCCGGATCGCAGGAGCCGGGTTTTTTGTTGGCCTTCATCCACTTTAAACAT CAATCCCCTTTTAAACACCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 232; Mature: 231
Protein sequence:
>232_residues MAQQLLMPKATAVWLVDNTALSFDQIAQFCKLHPLEVKAIADGESAQGIKGLDPIATGQLSRDEIARGEANSNHKLKLSE PKVRVPDSKRKGPRYTPVSKRQDRPNAILWLVRNHPELKDAQISRLVGTTKATIEQIRERTHWNSANLTPMDPVTLGLCS QIDLDLEVERAAKGRPLPSAAETGATLESAQETEKLSFGQEREEEKEIDADAVFAKLKSLKSDRKDDEDDDY
Sequences:
>Translated_232_residues MAQQLLMPKATAVWLVDNTALSFDQIAQFCKLHPLEVKAIADGESAQGIKGLDPIATGQLSRDEIARGEANSNHKLKLSE PKVRVPDSKRKGPRYTPVSKRQDRPNAILWLVRNHPELKDAQISRLVGTTKATIEQIRERTHWNSANLTPMDPVTLGLCS QIDLDLEVERAAKGRPLPSAAETGATLESAQETEKLSFGQEREEEKEIDADAVFAKLKSLKSDRKDDEDDDY >Mature_231_residues AQQLLMPKATAVWLVDNTALSFDQIAQFCKLHPLEVKAIADGESAQGIKGLDPIATGQLSRDEIARGEANSNHKLKLSEP KVRVPDSKRKGPRYTPVSKRQDRPNAILWLVRNHPELKDAQISRLVGTTKATIEQIRERTHWNSANLTPMDPVTLGLCSQ IDLDLEVERAAKGRPLPSAAETGATLESAQETEKLSFGQEREEEKEIDADAVFAKLKSLKSDRKDDEDDDY
Specific function: Unknown
COG id: COG3820
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25791; Mature: 25660
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQQLLMPKATAVWLVDNTALSFDQIAQFCKLHPLEVKAIADGESAQGIKGLDPIATGQL CCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCC SRDEIARGEANSNHKLKLSEPKVRVPDSKRKGPRYTPVSKRQDRPNAILWLVRNHPELKD CHHHHHCCCCCCCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHH AQISRLVGTTKATIEQIRERTHWNSANLTPMDPVTLGLCSQIDLDLEVERAAKGRPLPSA HHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEHHHHHCCCCCCCH AETGATLESAQETEKLSFGQEREEEKEIDADAVFAKLKSLKSDRKDDEDDDY HHCCCHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure AQQLLMPKATAVWLVDNTALSFDQIAQFCKLHPLEVKAIADGESAQGIKGLDPIATGQL CCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCC SRDEIARGEANSNHKLKLSEPKVRVPDSKRKGPRYTPVSKRQDRPNAILWLVRNHPELKD CHHHHHCCCCCCCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHH AQISRLVGTTKATIEQIRERTHWNSANLTPMDPVTLGLCSQIDLDLEVERAAKGRPLPSA HHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEHHHHHCCCCCCCH AETGATLESAQETEKLSFGQEREEEKEIDADAVFAKLKSLKSDRKDDEDDDY HHCCCHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA