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The map label for this gene is rimM [H]

Identifier: 150398292

GI number: 150398292

Start: 3244455

End: 3245075

Strand: Direct

Name: rimM [H]

Synonym: Smed_3098

Alternate gene names: 150398292

Gene position: 3244455-3245075 (Clockwise)

Preceding gene: 150398291

Following gene: 150398293

Centisome position: 85.79

GC content: 59.9

Gene sequence:

>621_bases
ATGCTCTTTTCCCGGTGGATTTCAGGAGCATGGGCAAGTTCACTCTGGATGCCGACAATGACACAGCTGAAAAATCCTGT
CCTGATGGCGACGATCGGTGCGGCGCAGGGGCTGCGCGGCGAGGTGAGGGTGAAGTCTTTCACGGACGATCCGACGGCAC
TTGGGGATTATGGAAATCTCCACAGCGAGGACGGCCGCGTCTTCGAGGTGCTCGAAATTCGCGAGGCGAAGAATGTGGTC
GTCGTGCGGTTTCGCGGTGTCAACGACCGAACGGCTGCCGAGGCGCTCAACGGGCTCGAGCTCTTCATCGAGCGCGACAA
TCTTCCCGATGACGATCTGGACGAGGACGAGTTCTTCTATGCCGATCTCGAGGGCATGGAGGCGGTCGACCGCACCGGCA
AGAGCTATGGTTCGGTGACCGGTGTCTTTGACTTCGGTGCTGGCGATCTTCTCGAACTCAAGGGCCCGGGCCTGCGGCCG
GTGCTGATTCCATTCACCGAATGGTCGGTGCTCGAAATCGACCTCGAAGCGGGCAAACTCGTCATCGACCCGACTGCAGC
AGGGCTGGTCGATGATGAGAAGAGTGGCCCAGGCAAGCCGTTTCCGACCAAGCGCAAGTGA

Upstream 100 bases:

>100_bases
GCTTCGGAAGCAGCCGCGGAATAATCTTCGCCGATCGGCAGTGAAAACGGGCGGCATTTCCATGCCGCCCGTTTTGCTTT
ATGTGCTCCGGGAAATTCGC

Downstream 100 bases:

>100_bases
GCCCCCGGCGATGCTCTTTCGTGCAACGGTCCTGACGCTCTATCCCGAAATGTTCCCCGGACATCTCGGCGTTTCGCTCG
CCGGAAAGGCACTGGAGCGC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MLFSRWISGAWASSLWMPTMTQLKNPVLMATIGAAQGLRGEVRVKSFTDDPTALGDYGNLHSEDGRVFEVLEIREAKNVV
VVRFRGVNDRTAAEALNGLELFIERDNLPDDDLDEDEFFYADLEGMEAVDRTGKSYGSVTGVFDFGAGDLLELKGPGLRP
VLIPFTEWSVLEIDLEAGKLVIDPTAAGLVDDEKSGPGKPFPTKRK

Sequences:

>Translated_206_residues
MLFSRWISGAWASSLWMPTMTQLKNPVLMATIGAAQGLRGEVRVKSFTDDPTALGDYGNLHSEDGRVFEVLEIREAKNVV
VVRFRGVNDRTAAEALNGLELFIERDNLPDDDLDEDEFFYADLEGMEAVDRTGKSYGSVTGVFDFGAGDLLELKGPGLRP
VLIPFTEWSVLEIDLEAGKLVIDPTAAGLVDDEKSGPGKPFPTKRK
>Mature_206_residues
MLFSRWISGAWASSLWMPTMTQLKNPVLMATIGAAQGLRGEVRVKSFTDDPTALGDYGNLHSEDGRVFEVLEIREAKNVV
VVRFRGVNDRTAAEALNGLELFIERDNLPDDDLDEDEFFYADLEGMEAVDRTGKSYGSVTGVFDFGAGDLLELKGPGLRP
VLIPFTEWSVLEIDLEAGKLVIDPTAAGLVDDEKSGPGKPFPTKRK

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=168, Percent_Identity=26.1904761904762, Blast_Score=77, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 22610; Mature: 22610

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFSRWISGAWASSLWMPTMTQLKNPVLMATIGAAQGLRGEVRVKSFTDDPTALGDYGNL
CCHHHHHCCHHHHHHCCCCHHHHCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCC
HSEDGRVFEVLEIREAKNVVVVRFRGVNDRTAAEALNGLELFIERDNLPDDDLDEDEFFY
CCCCCCEEEEEEECCCCCEEEEEEECCCCHHHHHHHCCEEEEEECCCCCCCCCCCCCEEE
ADLEGMEAVDRTGKSYGSVTGVFDFGAGDLLELKGPGLRPVLIPFTEWSVLEIDLEAGKL
ECCCCHHHHHHCCCCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEEECCCEE
VIDPTAAGLVDDEKSGPGKPFPTKRK
EECCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLFSRWISGAWASSLWMPTMTQLKNPVLMATIGAAQGLRGEVRVKSFTDDPTALGDYGNL
CCHHHHHCCHHHHHHCCCCHHHHCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCC
HSEDGRVFEVLEIREAKNVVVVRFRGVNDRTAAEALNGLELFIERDNLPDDDLDEDEFFY
CCCCCCEEEEEEECCCCCEEEEEEECCCCHHHHHHHCCEEEEEECCCCCCCCCCCCCEEE
ADLEGMEAVDRTGKSYGSVTGVFDFGAGDLLELKGPGLRPVLIPFTEWSVLEIDLEAGKL
ECCCCHHHHHHCCCCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEEECCCEE
VIDPTAAGLVDDEKSGPGKPFPTKRK
EECCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]