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The map label for this gene is ycdK [C]

Identifier: 150398224

GI number: 150398224

Start: 3177903

End: 3178283

Strand: Direct

Name: ycdK [C]

Synonym: Smed_3029

Alternate gene names: 150398224

Gene position: 3177903-3178283 (Clockwise)

Preceding gene: 150398223

Following gene: 150398225

Centisome position: 84.03

GC content: 60.63

Gene sequence:

>381_bases
ATGACGCGCAAGCTCATCTCGTCCGGTTCTCCCTTCGAAAGGACGGCAGGCTATTCGCGTGCCGTCGTGAAAGGCGACTG
GTGCTTCGTCTCCGGCACGACCGGCTACGACTACGCCACCATGACCATGCCGGAAACGGTGGAGGAACAGGCACGCAACT
GCCTGAAGACGATCGAAGACGCCCTGGAACAAGCCGGTTTCTCGCTGTCGGACGTCGTGCGCAACCATTACTACGTCACC
GATGCGAGCTTTGCCGACCGCGTCTTCCCAATCTTCGGCGAGACCTTCGGCGACATCCGCCCGGCCGCAACGATGATCGT
CTGCGACCTCATCCGATCGGAAATGCTGATCGAGATCGAGGTCACGGCGTTTCGCGGCTAA

Upstream 100 bases:

>100_bases
ACGGCCTCGACGATATCGGCCTCACGCTCGAAAAGGGTCGCTCCATCGACAATTTCGAGAAGGCGACCGCCGCCTCGCGC
CCTTGGGCCTGAACTGCCGG

Downstream 100 bases:

>100_bases
GCCGCTTCGCGTCGTTCGACCGAAGGCCGCATCCAAGCGGTGCGAATCGTTTTTCATTGACCGCGATCCCCGCCTCGCGC
TATCAAACAATCCGTGGTGA

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MTRKLISSGSPFERTAGYSRAVVKGDWCFVSGTTGYDYATMTMPETVEEQARNCLKTIEDALEQAGFSLSDVVRNHYYVT
DASFADRVFPIFGETFGDIRPAATMIVCDLIRSEMLIEIEVTAFRG

Sequences:

>Translated_126_residues
MTRKLISSGSPFERTAGYSRAVVKGDWCFVSGTTGYDYATMTMPETVEEQARNCLKTIEDALEQAGFSLSDVVRNHYYVT
DASFADRVFPIFGETFGDIRPAATMIVCDLIRSEMLIEIEVTAFRG
>Mature_125_residues
TRKLISSGSPFERTAGYSRAVVKGDWCFVSGTTGYDYATMTMPETVEEQARNCLKTIEDALEQAGFSLSDVVRNHYYVTD
ASFADRVFPIFGETFGDIRPAATMIVCDLIRSEMLIEIEVTAFRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14043; Mature: 13912

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRKLISSGSPFERTAGYSRAVVKGDWCFVSGTTGYDYATMTMPETVEEQARNCLKTIED
CCCCCCCCCCCCHHHCCCCEEEEECCEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHH
ALEQAGFSLSDVVRNHYYVTDASFADRVFPIFGETFGDIRPAATMIVCDLIRSEMLIEIE
HHHHCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEEE
VTAFRG
EEEECC
>Mature Secondary Structure 
TRKLISSGSPFERTAGYSRAVVKGDWCFVSGTTGYDYATMTMPETVEEQARNCLKTIED
CCCCCCCCCCCHHHCCCCEEEEECCEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHHH
ALEQAGFSLSDVVRNHYYVTDASFADRVFPIFGETFGDIRPAATMIVCDLIRSEMLIEIE
HHHHCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEEEE
VTAFRG
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12000953; 2199329 [H]