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The map label for this gene is ctpA [H]

Identifier: 150398211

GI number: 150398211

Start: 3164381

End: 3165703

Strand: Direct

Name: ctpA [H]

Synonym: Smed_3016

Alternate gene names: 150398211

Gene position: 3164381-3165703 (Clockwise)

Preceding gene: 150398210

Following gene: 150398212

Centisome position: 83.67

GC content: 63.34

Gene sequence:

>1323_bases
ATGATACGTAGAGCTTCACTTGTCCTGGTCGGGGCGCTGATGGGCGCGACGGCGATGGGCGTCGTCTATTCGGCAACGAT
GCCGGCCGTGGCCGCGAATTCGTCGACATACCGCGAACTCGCCATCTTCGGCGACGTCTTCGAGCGCGTGCGTGCGCAGT
ATGTGACGCCGCCCCAGGACGACAAGCTGATCGAGAACGCGATCAATGGCATGCTCACCTCGCTCGACCCGCATTCGAGC
TACATGAACTCGGCCGATGCCGAAGACATGCGCACCCAGACGCGCGGCGAGTTCGGCGGCCTCGGCATCGAGGTCACCAT
GGAGGAAGACCTCGTCAAGGTAACGAGCCCGATCGACGACACGCCCGCCGCCCGCGCCGGCGTGCTGGCAGGCGATTTCA
TTTCGAAGATCGACGGCCAGGACGTCCGCGGCCTGAAACTCGAAGAGGCGGTCGACAAGATGCGCGGCGCCGTCGGCACG
CCGATCAAGCTGACGATCCTTCGCAAGGGAGCCGAAAAACCGATCGAGCTGACGATCGTACGCGACGTGATCGCCGTACG
CGCGGTGAAGGTGCGTGTCGAAGGCGATGTCGGCTATCTCAGGGTTATCTCGTTTACGGAAAAGACCTTCGAAGACCTGA
AGAAGGGCATTGAAAAGATTCAGGCGGAAGTTCCGGTGGACAAGCTCAAGGGCTATGTTCTCGATCTGCGCCTCAACCCG
GGCGGCCTGCTCGATCAGGCGATCAATGTTTCGGACGCGTTTCTGGAGCGTGGCGAGGTCGTTTCGACCCGCGGCCGCAA
TCCGGACGAAACCCGCCGTTTCAATGCGACCCCCGGCGATCTCGCCGACGGCAAGCCCGTCGTCGTGCTCGTCAACGGCG
GCTCGGCATCCGCTTCGGAAATCGTGGCCGGAGCGCTGCAGGACCTGAAGCGGGCGACCGTTCTCGGCACGCGCTCCTTC
GGCAAGGGCTCGGTGCAGACGATCATCCCGCTCGGCGAGGCCGGCGCACTGCGCCTGACGACGGCGCTCTATTACACGCC
GTCCGGCAAGTCGATCCAGGGCACCGGCATCACGCCGGACATCAAGGTCGAGCAGCCGCTGCCCCCCGAACTTCTGGGCA
AGGTGGAAGCGCAGGGCGAATCCGATCTCAGAGGCCACATTCCGGGCCAGGAAGAGACCGAAGAAGGCTCCGGTTCCGTT
GCCTACGTGCCACCGGAGACCAAGGACGACATTCAGCTCAACTATGCGTTCGACCTCTTGCGCGGCAAGAAGACGGATCC
GTCCTTCCCGGCCAATCCGCAGCAGGCGCAGCTGAAAGAATAG

Upstream 100 bases:

>100_bases
GAAACCGACAGGCCAACGCTTTACATTGAGTTCAGAAAAGACGGGAAACCGGTTGATTCCCGACCGTGGTGGACCGCAGC
AGAGGTTGGAAGGGCGCGAA

Downstream 100 bases:

>100_bases
GGCCTCGACAGGGCCGACAAAGAGGCGCCGGGCTGTTCAACCCGGCGCCTTTATATTATCCGTCGCATGTAGTCGGATGT
GCGGTGATTCTGATCCCCTT

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: C-terminal-processing protease [H]

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MIRRASLVLVGALMGATAMGVVYSATMPAVAANSSTYRELAIFGDVFERVRAQYVTPPQDDKLIENAINGMLTSLDPHSS
YMNSADAEDMRTQTRGEFGGLGIEVTMEEDLVKVTSPIDDTPAARAGVLAGDFISKIDGQDVRGLKLEEAVDKMRGAVGT
PIKLTILRKGAEKPIELTIVRDVIAVRAVKVRVEGDVGYLRVISFTEKTFEDLKKGIEKIQAEVPVDKLKGYVLDLRLNP
GGLLDQAINVSDAFLERGEVVSTRGRNPDETRRFNATPGDLADGKPVVVLVNGGSASASEIVAGALQDLKRATVLGTRSF
GKGSVQTIIPLGEAGALRLTTALYYTPSGKSIQGTGITPDIKVEQPLPPELLGKVEAQGESDLRGHIPGQEETEEGSGSV
AYVPPETKDDIQLNYAFDLLRGKKTDPSFPANPQQAQLKE

Sequences:

>Translated_440_residues
MIRRASLVLVGALMGATAMGVVYSATMPAVAANSSTYRELAIFGDVFERVRAQYVTPPQDDKLIENAINGMLTSLDPHSS
YMNSADAEDMRTQTRGEFGGLGIEVTMEEDLVKVTSPIDDTPAARAGVLAGDFISKIDGQDVRGLKLEEAVDKMRGAVGT
PIKLTILRKGAEKPIELTIVRDVIAVRAVKVRVEGDVGYLRVISFTEKTFEDLKKGIEKIQAEVPVDKLKGYVLDLRLNP
GGLLDQAINVSDAFLERGEVVSTRGRNPDETRRFNATPGDLADGKPVVVLVNGGSASASEIVAGALQDLKRATVLGTRSF
GKGSVQTIIPLGEAGALRLTTALYYTPSGKSIQGTGITPDIKVEQPLPPELLGKVEAQGESDLRGHIPGQEETEEGSGSV
AYVPPETKDDIQLNYAFDLLRGKKTDPSFPANPQQAQLKE
>Mature_440_residues
MIRRASLVLVGALMGATAMGVVYSATMPAVAANSSTYRELAIFGDVFERVRAQYVTPPQDDKLIENAINGMLTSLDPHSS
YMNSADAEDMRTQTRGEFGGLGIEVTMEEDLVKVTSPIDDTPAARAGVLAGDFISKIDGQDVRGLKLEEAVDKMRGAVGT
PIKLTILRKGAEKPIELTIVRDVIAVRAVKVRVEGDVGYLRVISFTEKTFEDLKKGIEKIQAEVPVDKLKGYVLDLRLNP
GGLLDQAINVSDAFLERGEVVSTRGRNPDETRRFNATPGDLADGKPVVVLVNGGSASASEIVAGALQDLKRATVLGTRSF
GKGSVQTIIPLGEAGALRLTTALYYTPSGKSIQGTGITPDIKVEQPLPPELLGKVEAQGESDLRGHIPGQEETEEGSGSV
AYVPPETKDDIQLNYAFDLLRGKKTDPSFPANPQQAQLKE

Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=321, Percent_Identity=31.7757009345794, Blast_Score=129, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 47116; Mature: 47116

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRRASLVLVGALMGATAMGVVYSATMPAVAANSSTYRELAIFGDVFERVRAQYVTPPQD
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC
DKLIENAINGMLTSLDPHSSYMNSADAEDMRTQTRGEFGGLGIEVTMEEDLVKVTSPIDD
HHHHHHHHHHHEECCCCCHHHHCCCCHHHHHHHHCCCCCCCEEEEEECCCHHHHCCCCCC
TPAARAGVLAGDFISKIDGQDVRGLKLEEAVDKMRGAVGTPIKLTILRKGAEKPIELTIV
CCCHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEH
RDVIAVRAVKVRVEGDVGYLRVISFTEKTFEDLKKGIEKIQAEVPVDKLKGYVLDLRLNP
HHHHHEEEEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEEEEECC
GGLLDQAINVSDAFLERGEVVSTRGRNPDETRRFNATPGDLADGKPVVVLVNGGSASASE
CCHHHHHCCHHHHHHHCCCEEECCCCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCCHHH
IVAGALQDLKRATVLGTRSFGKGSVQTIIPLGEAGALRLTTALYYTPSGKSIQGTGITPD
HHHHHHHHHHHHHHEECCCCCCCCCEEEEECCCCCCEEEEEEEEECCCCCEEECCCCCCC
IKVEQPLPPELLGKVEAQGESDLRGHIPGQEETEEGSGSVAYVPPETKDDIQLNYAFDLL
CEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEHH
RGKKTDPSFPANPQQAQLKE
CCCCCCCCCCCCCCHHCCCC
>Mature Secondary Structure
MIRRASLVLVGALMGATAMGVVYSATMPAVAANSSTYRELAIFGDVFERVRAQYVTPPQD
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC
DKLIENAINGMLTSLDPHSSYMNSADAEDMRTQTRGEFGGLGIEVTMEEDLVKVTSPIDD
HHHHHHHHHHHEECCCCCHHHHCCCCHHHHHHHHCCCCCCCEEEEEECCCHHHHCCCCCC
TPAARAGVLAGDFISKIDGQDVRGLKLEEAVDKMRGAVGTPIKLTILRKGAEKPIELTIV
CCCHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEH
RDVIAVRAVKVRVEGDVGYLRVISFTEKTFEDLKKGIEKIQAEVPVDKLKGYVLDLRLNP
HHHHHEEEEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHCCEEEEEEECC
GGLLDQAINVSDAFLERGEVVSTRGRNPDETRRFNATPGDLADGKPVVVLVNGGSASASE
CCHHHHHCCHHHHHHHCCCEEECCCCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCCHHH
IVAGALQDLKRATVLGTRSFGKGSVQTIIPLGEAGALRLTTALYYTPSGKSIQGTGITPD
HHHHHHHHHHHHHHEECCCCCCCCCEEEEECCCCCCEEEEEEEEECCCCCEEECCCCCCC
IKVEQPLPPELLGKVEAQGESDLRGHIPGQEETEEGSGSVAYVPPETKDDIQLNYAFDLL
CEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEHH
RGKKTDPSFPANPQQAQLKE
CCCCCCCCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141685 [H]