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The map label for this gene is ybdA [C]

Identifier: 150398169

GI number: 150398169

Start: 3118942

End: 3120189

Strand: Reverse

Name: ybdA [C]

Synonym: Smed_2972

Alternate gene names: 150398169

Gene position: 3120189-3118942 (Counterclockwise)

Preceding gene: 150398171

Following gene: 150398162

Centisome position: 82.5

GC content: 63.62

Gene sequence:

>1248_bases
ATGTCGGCCGTTCATGCCGCGCACCGTTTCGCTGCCTTCAGGCATGTCGGCTACCGGCGCTATTTCTTCTCACGACTGCT
TGCCTACTTCGCCGTCCAGATCATGTCGGTGGCCGTCGGCTGGCAGATATACGATCTTACGCGCGATCCATTGTCGCTCG
GCCTCATCGGCCTTTTCCAGTTCCTGCCCTCGCTCTTCCTCATTCTCGTGACGGGCAGCGTGGCGGACCGTTACAACCGC
CGTGCGATCATGGGCATCTGCATGCTGGTCAGCACGCTCTGCGGCGCTGCACTCCTCCTGTTGACGGTGACGGGACTGTT
TTCGCCCTGGCCGGTCTACGCGATCCTTGTCGTGTTCGGCATAGAGCGCGCTTTTCTGGGCCCCGCATCCCAGTCTCTGG
CGCCCAATCTGGTGCCCGCGGAAGACCTGTCCAATGCCATCGCCTGGAACTCGACCTCGTGGCAGACGGCAATGATTGTC
GGTCCGGTGGCGGGAGGACTGCTCTACGGTCTGGGTCCGACCGTACCCTATGCGGTCAGTCTCGGTTTCTTCGCTGCGGG
CGCCCTGATGGTCTTCGCCGTGCCGAAGCCGGAACAGCGGACGCCGCCTTCGGCCGAGACCTGGAAGACGATCACCGCAG
GATTCCGCTACATAAAGGCCGAGAAGATCGTGCTCGGGGCGATCTCGCTCGATCTCTTCGCCGTGCTGCTCGGGGGCGCG
GTCGCGCTCATGCCGGTCTTTGCGCGCGATGTCCTGACGCTCGGGCCATGGGGTCTCGGGCTGCTGCGGGCAGCCCCCGG
CATCGGTGCTGTCGCCATGGCGGTTTGGCTTGCCGCTCATCCGATCCGAAATCGAGCCGGCCTCTACATGTTTGTCGGCG
TTGCTCTCTTCGGCACCGCAACGGTCGTTTTCGGTCTGTCGGCGACGCCGTGGATCTCGATTGTCGCGCTCATCGTCATG
GGCGCTTCCGACATGATTTCGGTCTATGTGCGCGAAATTCTGATCACGCTCTGGACGCCGGACGAGCTGCGCGGCCGGGT
GAACGCCGTCAACATGGTGTTTGTCGGCGCGTCCAACGAACTCGGCGAATTCCGCGCCGGCATGATGGCATCCGGTTTCG
GCGCAATCTTCGCCGTCGTCTTCGGTGGTCTGGGGACGTTGTTGGTGGCACTTCTCTGGGCGGCGGGCTTTCCGCAATTG
CGCCGGATCGACACGCTGGATGTGCCGGAGGCGCAGCGGGGCGGATGA

Upstream 100 bases:

>100_bases
TCGGTTCCGATGCGAATCACCGATGCGGGATCTTCAAGTCTGCATGCTCCCGTCGTCGAATTTAAATGATATCAGGAGCA
CGCAGCAGGAGCATTCCAGC

Downstream 100 bases:

>100_bases
GCTTCGATATCCACGGGTGGCTTGAGCGATACGGCGGCGGCATATTCCCTTCACCCCGCAAGCGAGGGAAGGTGGCGGCA
GCCGGGTGAGGGGCCAGTCG

Product: major facilitator transporter

Products: NA

Alternate protein names: Facilitator Superfamily Protein; Facilitator Superfamily Permease; Facilitator Superfamily Transporter; MFS Permease; DrugProton Antiporter; Membrane Transporter; Permease Of Facilitator Superfamily; Transmembrane Protein; Transporter Facilitator Family; MFS Family Transporter; Facilitator Superfamily; Facilitator MFS1 Protein; Permease Facilitator Superfamily; Macrolide-Efflux Protein; Integral Membrane Protein; Facilitator Superfamily Transporter Permease; Permease Protein; Drug Resistance Efflux Protein; MFS Family Transporter Protein; Permease; Permease MDR ; Facilitator Superfamily Transmembrane Transporter; Arabinose Efflux Permease; Permease Of Facilitator Superfamily Protein; Integral Membrane Efflux Protein; Drug Proton Antiporter; Integral Membrane Protein MFS Transporter; Siderophore Export Protein; Membrame Protein; DrugH+ Antiporter; Facilitator Family Transporter; Facilitator Superfamily Multidrug Resistance Protein; Facilitator Superfamily Transporter Transporter; Permeases Of Facilitator Superfamily

Number of amino acids: Translated: 415; Mature: 414

Protein sequence:

>415_residues
MSAVHAAHRFAAFRHVGYRRYFFSRLLAYFAVQIMSVAVGWQIYDLTRDPLSLGLIGLFQFLPSLFLILVTGSVADRYNR
RAIMGICMLVSTLCGAALLLLTVTGLFSPWPVYAILVVFGIERAFLGPASQSLAPNLVPAEDLSNAIAWNSTSWQTAMIV
GPVAGGLLYGLGPTVPYAVSLGFFAAGALMVFAVPKPEQRTPPSAETWKTITAGFRYIKAEKIVLGAISLDLFAVLLGGA
VALMPVFARDVLTLGPWGLGLLRAAPGIGAVAMAVWLAAHPIRNRAGLYMFVGVALFGTATVVFGLSATPWISIVALIVM
GASDMISVYVREILITLWTPDELRGRVNAVNMVFVGASNELGEFRAGMMASGFGAIFAVVFGGLGTLLVALLWAAGFPQL
RRIDTLDVPEAQRGG

Sequences:

>Translated_415_residues
MSAVHAAHRFAAFRHVGYRRYFFSRLLAYFAVQIMSVAVGWQIYDLTRDPLSLGLIGLFQFLPSLFLILVTGSVADRYNR
RAIMGICMLVSTLCGAALLLLTVTGLFSPWPVYAILVVFGIERAFLGPASQSLAPNLVPAEDLSNAIAWNSTSWQTAMIV
GPVAGGLLYGLGPTVPYAVSLGFFAAGALMVFAVPKPEQRTPPSAETWKTITAGFRYIKAEKIVLGAISLDLFAVLLGGA
VALMPVFARDVLTLGPWGLGLLRAAPGIGAVAMAVWLAAHPIRNRAGLYMFVGVALFGTATVVFGLSATPWISIVALIVM
GASDMISVYVREILITLWTPDELRGRVNAVNMVFVGASNELGEFRAGMMASGFGAIFAVVFGGLGTLLVALLWAAGFPQL
RRIDTLDVPEAQRGG
>Mature_414_residues
SAVHAAHRFAAFRHVGYRRYFFSRLLAYFAVQIMSVAVGWQIYDLTRDPLSLGLIGLFQFLPSLFLILVTGSVADRYNRR
AIMGICMLVSTLCGAALLLLTVTGLFSPWPVYAILVVFGIERAFLGPASQSLAPNLVPAEDLSNAIAWNSTSWQTAMIVG
PVAGGLLYGLGPTVPYAVSLGFFAAGALMVFAVPKPEQRTPPSAETWKTITAGFRYIKAEKIVLGAISLDLFAVLLGGAV
ALMPVFARDVLTLGPWGLGLLRAAPGIGAVAMAVWLAAHPIRNRAGLYMFVGVALFGTATVVFGLSATPWISIVALIVMG
ASDMISVYVREILITLWTPDELRGRVNAVNMVFVGASNELGEFRAGMMASGFGAIFAVVFGGLGTLLVALLWAAGFPQLR
RIDTLDVPEAQRGG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44261; Mature: 44130

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVHAAHRFAAFRHVGYRRYFFSRLLAYFAVQIMSVAVGWQIYDLTRDPLSLGLIGLFQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHH
FLPSLFLILVTGSVADRYNRRAIMGICMLVSTLCGAALLLLTVTGLFSPWPVYAILVVFG
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IERAFLGPASQSLAPNLVPAEDLSNAIAWNSTSWQTAMIVGPVAGGLLYGLGPTVPYAVS
HHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHH
LGFFAAGALMVFAVPKPEQRTPPSAETWKTITAGFRYIKAEKIVLGAISLDLFAVLLGGA
HHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHH
VALMPVFARDVLTLGPWGLGLLRAAPGIGAVAMAVWLAAHPIRNRAGLYMFVGVALFGTA
HHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
TVVFGLSATPWISIVALIVMGASDMISVYVREILITLWTPDELRGRVNAVNMVFVGASNE
HHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHCCCEEEEEEEEEECCCC
LGEFRAGMMASGFGAIFAVVFGGLGTLLVALLWAAGFPQLRRIDTLDVPEAQRGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SAVHAAHRFAAFRHVGYRRYFFSRLLAYFAVQIMSVAVGWQIYDLTRDPLSLGLIGLFQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHH
FLPSLFLILVTGSVADRYNRRAIMGICMLVSTLCGAALLLLTVTGLFSPWPVYAILVVFG
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
IERAFLGPASQSLAPNLVPAEDLSNAIAWNSTSWQTAMIVGPVAGGLLYGLGPTVPYAVS
HHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEECCHHHHHHHCCCCCHHHHHH
LGFFAAGALMVFAVPKPEQRTPPSAETWKTITAGFRYIKAEKIVLGAISLDLFAVLLGGA
HHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHH
VALMPVFARDVLTLGPWGLGLLRAAPGIGAVAMAVWLAAHPIRNRAGLYMFVGVALFGTA
HHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
TVVFGLSATPWISIVALIVMGASDMISVYVREILITLWTPDELRGRVNAVNMVFVGASNE
HHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHCCCEEEEEEEEEECCCC
LGEFRAGMMASGFGAIFAVVFGGLGTLLVALLWAAGFPQLRRIDTLDVPEAQRGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA