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The map label for this gene is sdhD [H]

Identifier: 150398155

GI number: 150398155

Start: 3107052

End: 3107432

Strand: Reverse

Name: sdhD [H]

Synonym: Smed_2958

Alternate gene names: 150398155

Gene position: 3107432-3107052 (Counterclockwise)

Preceding gene: 150398156

Following gene: 150398154

Centisome position: 82.17

GC content: 58.53

Gene sequence:

>381_bases
ATGAGCATGCGCACTCCTCTCGGCAAGGTCCGGGGTCTCGGTTCGGCAAAGGAAGGTACGGATCACTTCTGGCGGCAGCG
CGTCACGGCCGTTGCAAGCATTCCGCTCACCATCTTCTTCGTCGTCTTCCTCGCCCATTATGCGGGCGCTCCGCATGCGG
AACTGCTTGCGGCCCTTGCAAATCCGTTCGTGGCGGTGACCATGGGGCTGATGGTTGTCGCCGGCCTTGTTCACATGAAG
ATCGGAATGCAGGTCATCATCGAGGACTACGTCCATGGGGAGGGCGCCAAGATCGCACTTCTCATGCTCAACACATTCTT
CACGATCGCGGTCGGCGGACTCTGTCTTTTCGCCGTCCTGAAGATCGCTTTTGCAGGATAA

Upstream 100 bases:

>100_bases
ACTTCGCGACCCGGGTGGCGAAGGCGATGATCGTCGCATCGGCGGCGCTGACGCTCGTCATCTGGATCGTCGGCTATCTC
GCTCGTTAAGGGACTTTGAC

Downstream 100 bases:

>100_bases
TTTCGCCATGGCATCGATCAGCACGCCCGCTGCAAACGGCAAGGCATACAAGTATGTCGACCACTCCTTCGACGTTGTCG
TCGTGGGCGCCGGCGGGGCG

Product: succinate dehydrogenase hydrophobic membrane anchor

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MSMRTPLGKVRGLGSAKEGTDHFWRQRVTAVASIPLTIFFVVFLAHYAGAPHAELLAALANPFVAVTMGLMVVAGLVHMK
IGMQVIIEDYVHGEGAKIALLMLNTFFTIAVGGLCLFAVLKIAFAG

Sequences:

>Translated_126_residues
MSMRTPLGKVRGLGSAKEGTDHFWRQRVTAVASIPLTIFFVVFLAHYAGAPHAELLAALANPFVAVTMGLMVVAGLVHMK
IGMQVIIEDYVHGEGAKIALLMLNTFFTIAVGGLCLFAVLKIAFAG
>Mature_125_residues
SMRTPLGKVRGLGSAKEGTDHFWRQRVTAVASIPLTIFFVVFLAHYAGAPHAELLAALANPFVAVTMGLMVVAGLVHMKI
GMQVIIEDYVHGEGAKIALLMLNTFFTIAVGGLCLFAVLKIAFAG

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 13428; Mature: 13297

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMRTPLGKVRGLGSAKEGTDHFWRQRVTAVASIPLTIFFVVFLAHYAGAPHAELLAALA
CCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
NPFVAVTMGLMVVAGLVHMKIGMQVIIEDYVHGEGAKIALLMLNTFFTIAVGGLCLFAVL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KIAFAG
HHHHCC
>Mature Secondary Structure 
SMRTPLGKVRGLGSAKEGTDHFWRQRVTAVASIPLTIFFVVFLAHYAGAPHAELLAALA
CCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
NPFVAVTMGLMVVAGLVHMKIGMQVIIEDYVHGEGAKIALLMLNTFFTIAVGGLCLFAVL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KIAFAG
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA