BacMap

Definition	Sinorhizobium medicae WSM419 chromosome, complete genome.
Accession	NC_009636
Length	3,781,904

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The map label for this gene is smoK [H]

Identifier: 150398102

GI number: 150398102

Start: 3047945

End: 3049015

Strand: Direct

Name: smoK [H]

Synonym: Smed_2904

Alternate gene names: 150398102

Gene position: 3047945-3049015 (Clockwise)

Preceding gene: 150398101

Following gene: 150398103

Centisome position: 80.59

GC content: 62.75

Gene sequence:

>1071_bases
ATGCTTGAAATGAAGAACATATCCAAGGTCGTGGGGGGCGAGATGCACATCCACCCGACCGACCTTGTGCTGGAGAGGGG
GTCGCTGAACGTGCTGCTCGGCCCGACGCTCTCCGGCAAGACGTCGCTGATGCGGCTGATGGCCGGTCTCGACAAGCCAG
CCTCCGGTTCGATCCATCTCGACAATGCGGACGTTACCGGCGTTCCGGTTCAGAAGCGCTCGGTTGCCATGGTCTACCAG
CAGTTCATCAACTATCCCGCGATGACGGTATACGAGAACATCGCCTCGCCTATGCGGATCAAGGGCGCCGACGCCGCCAC
CATCGACCGCGAAGTGCGCAAGGCGGCGGAACTTCTGAAGCTTACGCCATATCTCGACCGCACGCCTCTCAACCTGTCCG
GCGGCCAGCAGCAGCGCACGGCGCTTGCGCGCGCCATCGTCAAGAACGCCGATCTGGTGCTGCTCGACGAACCGCTTGCG
AACCTCGACTACAAGCTGCGGGAGGAATTGCGCGAAGAGCTGCCGAAGATTTTCTCCGCATCAGGCGCGATCTTCGTCTA
TGCGACGACCGAGCCTTCCGAAGCGCTTCTCCTCGGCGGCAACACCGCCACGATGAGCGAGGGAAGGATCACCCAGTTCG
GCCGCACAATCGACGTCTATCGCCAACCTGTCGATATCGTTACGGCACGTACATTTGCCGATCCGCCGCTCAATACCATC
GACCTCCTGAAGAGCGGGTCGCATTTCGCGCTCGAAGGCAAGCCCGTGCTTCCCGTTCCCGTGCATCTCGGCGCCGTCGC
CGACGGCCCCTGTACCGTCGCTTTCCAGCCACACCACCTTTCTTTCGACCCGCCGAACGGCAGCGACCAACCACTTGCCG
TCAAGACGGCGATCTCGGAAATCACCGGGTCCGAGAGTTTCATTCACGTCGCGTTCGCGGGCGCCCGCTGGGTCATGCTC
GCGCCCGGCATTCACGAGATCGAACCGGACGCAACCCTCAGAGTCTTCGTCGACACGCGCCACCTTATGGCCTTCGGGCC
GGACGGCAGGGCGGTCGGCGGAAGGGCCTGA

Upstream 100 bases:

>100_bases
GGGCGCAAATCGCGGAACTGGAGGAATATATCCGGGCAGCGGCCAACGCCGCCGCCTGAGATACCACGGCTGAACCGCCG
GTGGCTGGGTGGAGAATTCA

Downstream 100 bases:

>100_bases
GGAAGGCGTCGGGGAGGAAACCATGGCACGCATCAATCTCGAACACATCCGCCACGCTTACGGCGCCAAGCCGAAGTCGG
AGAGCGATTATGCGCTGAAG

Product: ABC transporter-like protein

Products: NA

Alternate protein names: Protein PolK [H]

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MLEMKNISKVVGGEMHIHPTDLVLERGSLNVLLGPTLSGKTSLMRLMAGLDKPASGSIHLDNADVTGVPVQKRSVAMVYQ
QFINYPAMTVYENIASPMRIKGADAATIDREVRKAAELLKLTPYLDRTPLNLSGGQQQRTALARAIVKNADLVLLDEPLA
NLDYKLREELREELPKIFSASGAIFVYATTEPSEALLLGGNTATMSEGRITQFGRTIDVYRQPVDIVTARTFADPPLNTI
DLLKSGSHFALEGKPVLPVPVHLGAVADGPCTVAFQPHHLSFDPPNGSDQPLAVKTAISEITGSESFIHVAFAGARWVML
APGIHEIEPDATLRVFVDTRHLMAFGPDGRAVGGRA

Sequences:

>Translated_356_residues
MLEMKNISKVVGGEMHIHPTDLVLERGSLNVLLGPTLSGKTSLMRLMAGLDKPASGSIHLDNADVTGVPVQKRSVAMVYQ
QFINYPAMTVYENIASPMRIKGADAATIDREVRKAAELLKLTPYLDRTPLNLSGGQQQRTALARAIVKNADLVLLDEPLA
NLDYKLREELREELPKIFSASGAIFVYATTEPSEALLLGGNTATMSEGRITQFGRTIDVYRQPVDIVTARTFADPPLNTI
DLLKSGSHFALEGKPVLPVPVHLGAVADGPCTVAFQPHHLSFDPPNGSDQPLAVKTAISEITGSESFIHVAFAGARWVML
APGIHEIEPDATLRVFVDTRHLMAFGPDGRAVGGRA
>Mature_356_residues
MLEMKNISKVVGGEMHIHPTDLVLERGSLNVLLGPTLSGKTSLMRLMAGLDKPASGSIHLDNADVTGVPVQKRSVAMVYQ
QFINYPAMTVYENIASPMRIKGADAATIDREVRKAAELLKLTPYLDRTPLNLSGGQQQRTALARAIVKNADLVLLDEPLA
NLDYKLREELREELPKIFSASGAIFVYATTEPSEALLLGGNTATMSEGRITQFGRTIDVYRQPVDIVTARTFADPPLNTI
DLLKSGSHFALEGKPVLPVPVHLGAVADGPCTVAFQPHHLSFDPPNGSDQPLAVKTAISEITGSESFIHVAFAGARWVML
APGIHEIEPDATLRVFVDTRHLMAFGPDGRAVGGRA

Specific function: Part Of The Binding-Protein-Dependent Transport System For Sn-Glycerol-3-Phosphate. Probably Responsible For Energy Coupling To The Transport System. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Inner Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI171184400, Length=224, Percent_Identity=29.4642857142857, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI27477115, Length=226, Percent_Identity=26.1061946902655, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI27262624, Length=194, Percent_Identity=28.3505154639175, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI27262626, Length=194, Percent_Identity=28.3505154639175, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI116734710, Length=221, Percent_Identity=26.2443438914027, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI27436953, Length=199, Percent_Identity=26.1306532663317, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI105990541, Length=210, Percent_Identity=27.1428571428571, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI21536376, Length=225, Percent_Identity=27.1111111111111, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI150417984, Length=198, Percent_Identity=28.7878787878788, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI153792144, Length=200, Percent_Identity=25, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI47078218, Length=201, Percent_Identity=29.3532338308458, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI45446740, Length=201, Percent_Identity=29.3532338308458, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI9961250, Length=169, Percent_Identity=28.9940828402367, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI4505771, Length=169, Percent_Identity=28.9940828402367, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI9961252, Length=169, Percent_Identity=28.9940828402367, Blast_Score=66, Evalue=5e-11,
Organism=Homo sapiens, GI110832837, Length=169, Percent_Identity=30.7692307692308, Blast_Score=66, Evalue=6e-11,
Organism=Homo sapiens, GI110832835, Length=169, Percent_Identity=30.7692307692308, Blast_Score=66, Evalue=6e-11,
Organism=Homo sapiens, GI110832839, Length=169, Percent_Identity=30.7692307692308, Blast_Score=66, Evalue=6e-11,
Organism=Escherichia coli, GI87082267, Length=319, Percent_Identity=32.9153605015674, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1787370, Length=229, Percent_Identity=40.174672489083, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI87081709, Length=317, Percent_Identity=31.2302839116719, Blast_Score=171, Evalue=8e-44,
Organism=Escherichia coli, GI1790467, Length=361, Percent_Identity=28.5318559556787, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI87081791, Length=323, Percent_Identity=31.8885448916409, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1788761, Length=354, Percent_Identity=29.6610169491525, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI1787712, Length=222, Percent_Identity=33.7837837837838, Blast_Score=142, Evalue=5e-35,
Organism=Escherichia coli, GI1789032, Length=237, Percent_Identity=30.379746835443, Blast_Score=118, Evalue=7e-28,
Organism=Escherichia coli, GI1787029, Length=228, Percent_Identity=32.0175438596491, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1788450, Length=240, Percent_Identity=29.5833333333333, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787089, Length=171, Percent_Identity=38.0116959064327, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1789873, Length=186, Percent_Identity=32.7956989247312, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1786253, Length=196, Percent_Identity=31.6326530612245, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1786703, Length=199, Percent_Identity=31.1557788944724, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1786563, Length=235, Percent_Identity=31.9148936170213, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1788225, Length=233, Percent_Identity=30.4721030042918, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1786398, Length=232, Percent_Identity=27.5862068965517, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1789672, Length=217, Percent_Identity=26.2672811059908, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI87081834, Length=204, Percent_Identity=29.9019607843137, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1786872, Length=217, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790162, Length=251, Percent_Identity=27.4900398406374, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1789891, Length=211, Percent_Identity=30.3317535545024, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787500, Length=265, Percent_Identity=27.1698113207547, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787164, Length=220, Percent_Identity=29.0909090909091, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI87081782, Length=190, Percent_Identity=33.6842105263158, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787758, Length=218, Percent_Identity=27.5229357798165, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787547, Length=249, Percent_Identity=23.2931726907631, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1787105, Length=185, Percent_Identity=29.7297297297297, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1788053, Length=177, Percent_Identity=28.2485875706215, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1790544, Length=181, Percent_Identity=28.1767955801105, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786981, Length=226, Percent_Identity=30.9734513274336, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786345, Length=166, Percent_Identity=32.5301204819277, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789962, Length=271, Percent_Identity=25.0922509225092, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788644, Length=201, Percent_Identity=26.865671641791, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87082268, Length=192, Percent_Identity=29.6875, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789586, Length=221, Percent_Identity=27.6018099547511, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786319, Length=213, Percent_Identity=27.2300469483568, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789864, Length=191, Percent_Identity=27.7486910994764, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789593, Length=168, Percent_Identity=29.7619047619048, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1786803, Length=213, Percent_Identity=26.2910798122066, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1786698, Length=204, Percent_Identity=24.0196078431373, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790525, Length=235, Percent_Identity=25.9574468085106, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI48995001, Length=198, Percent_Identity=28.7878787878788, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789991, Length=170, Percent_Identity=30, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788540, Length=216, Percent_Identity=25.462962962963, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788210, Length=224, Percent_Identity=25, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI48994943, Length=200, Percent_Identity=29, Blast_Score=62, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=214, Percent_Identity=26.1682242990654, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71983523, Length=214, Percent_Identity=26.1682242990654, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71983510, Length=214, Percent_Identity=26.1682242990654, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193202349, Length=168, Percent_Identity=30.3571428571429, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17565586, Length=216, Percent_Identity=26.8518518518519, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115533592, Length=174, Percent_Identity=29.8850574712644, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115533608, Length=222, Percent_Identity=27.027027027027, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17569081, Length=169, Percent_Identity=30.1775147928994, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25146765, Length=175, Percent_Identity=30.8571428571429, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71992070, Length=175, Percent_Identity=30.8571428571429, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17569145, Length=213, Percent_Identity=24.4131455399061, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI86564969, Length=175, Percent_Identity=30.8571428571429, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71992066, Length=175, Percent_Identity=30.8571428571429, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71992290, Length=214, Percent_Identity=26.1682242990654, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI221512771, Length=211, Percent_Identity=28.9099526066351, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24643674, Length=222, Percent_Identity=24.7747747747748, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24666092, Length=214, Percent_Identity=24.2990654205607, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24648314, Length=214, Percent_Identity=26.1682242990654, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI116007184, Length=210, Percent_Identity=26.6666666666667, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI221500365, Length=210, Percent_Identity=26.6666666666667, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28573571, Length=213, Percent_Identity=22.5352112676056, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28573573, Length=212, Percent_Identity=22.6415094339623, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24582014, Length=181, Percent_Identity=30.3867403314917, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24582012, Length=181, Percent_Identity=30.3867403314917, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28574150, Length=202, Percent_Identity=25.7425742574257, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI116007328, Length=202, Percent_Identity=25.7425742574257, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24581407, Length=272, Percent_Identity=24.6323529411765, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR008995
- InterPro:   IPR005116 [H]

Pfam domain/function: PF00005 ABC_tran; PF03459 TOBE [H]

EC number: NA

Molecular weight: Translated: 38415; Mature: 38415

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEMKNISKVVGGEMHIHPTDLVLERGSLNVLLGPTLSGKTSLMRLMAGLDKPASGSIHL
CCCHHHHHHHHCCEEEECCHHHEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE
DNADVTGVPVQKRSVAMVYQQFINYPAMTVYENIASPMRIKGADAATIDREVRKAAELLK
CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHH
LTPYLDRTPLNLSGGQQQRTALARAIVKNADLVLLDEPLANLDYKLREELREELPKIFSA
HCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCC
SGAIFVYATTEPSEALLLGGNTATMSEGRITQFGRTIDVYRQPVDIVTARTFADPPLNTI
CCCEEEEEECCCCCEEEECCCCCCCCCCCHHHHCCCHHHHCCCHHEEEEEECCCCCCCHH
DLLKSGSHFALEGKPVLPVPVHLGAVADGPCTVAFQPHHLSFDPPNGSDQPLAVKTAISE
HHHCCCCEEEECCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCCCCEEHHHHHHH
ITGSESFIHVAFAGARWVMLAPGIHEIEPDATLRVFVDTRHLMAFGPDGRAVGGRA
HCCCCCEEEEEEECCEEEEECCCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCC
>Mature Secondary Structure
MLEMKNISKVVGGEMHIHPTDLVLERGSLNVLLGPTLSGKTSLMRLMAGLDKPASGSIHL
CCCHHHHHHHHCCEEEECCHHHEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEE
DNADVTGVPVQKRSVAMVYQQFINYPAMTVYENIASPMRIKGADAATIDREVRKAAELLK
CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHH
LTPYLDRTPLNLSGGQQQRTALARAIVKNADLVLLDEPLANLDYKLREELREELPKIFSA
HCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCC
SGAIFVYATTEPSEALLLGGNTATMSEGRITQFGRTIDVYRQPVDIVTARTFADPPLNTI
CCCEEEEEECCCCCEEEECCCCCCCCCCCHHHHCCCHHHHCCCHHEEEEEECCCCCCCHH
DLLKSGSHFALEGKPVLPVPVHLGAVADGPCTVAFQPHHLSFDPPNGSDQPLAVKTAISE
HHHCCCCEEEECCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCCCCCEEHHHHHHH
ITGSESFIHVAFAGARWVMLAPGIHEIEPDATLRVFVDTRHLMAFGPDGRAVGGRA
HCCCCCEEEEEEECCEEEEECCCCCCCCCCCEEEEEEECCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9335280 [H]