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The map label for this gene is asnC [C]

Identifier: 150398088

GI number: 150398088

Start: 3031856

End: 3032290

Strand: Reverse

Name: asnC [C]

Synonym: Smed_2890

Alternate gene names: 150398088

Gene position: 3032290-3031856 (Counterclockwise)

Preceding gene: 150398092

Following gene: 150398087

Centisome position: 80.18

GC content: 62.07

Gene sequence:

>435_bases
ATGGATGATCTCGATCAGGCGCTCATCGGCGCCCTCCGGCAAAATTCCCGCATGCCAGTCTCGACGCTTTCGGCGATCAC
TGGCGTCTCGCGTGCGACAGTCGCTGCGCGCATCGACCGTCTGGTGGCCAATGGCACGATTGCCGCCTTCACCATCCGCA
CCGGCGCCGAAATACCCGCTTCCGGCGTCCGGGCCATCGTCATGATCGAGGTTCACGGAAAGATGGCAGACCGTGTCGCG
GAGCAATTGCGCGGGCTGCCGCAGGTGCGGGCCCTGCACAGCACCAACGGCCGGTGGGACTTCATCGCCGAGCTTGAGGA
TCGGGATCTTGCGAGTTTCGACGAGACCTTGCGGCGCATTCGATTGATCGATGGAATTACCGTGACCGAAACGAACATCC
TGTTGAAGACCAGCAAGCTGACAGGGGCGTGGTGA

Upstream 100 bases:

>100_bases
CAGATTATCGTCAAAAAGCGTGTCGGCAAAAAGATGGAAAACTGCCGATCGGCAAGTTAAGATGTGCAAAGTGAGAAGCC
CGTTTCGACAAAATGACAAG

Downstream 100 bases:

>100_bases
GCGCAGCCGCGTCCCCGCACGACAGCAGTTCATAGTCTTTTTGTTCTTGATTTGTTCATGTCTTCCGGTAAGATGTTCGT
CTCAGCAAACAAGAGAGGCA

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MDDLDQALIGALRQNSRMPVSTLSAITGVSRATVAARIDRLVANGTIAAFTIRTGAEIPASGVRAIVMIEVHGKMADRVA
EQLRGLPQVRALHSTNGRWDFIAELEDRDLASFDETLRRIRLIDGITVTETNILLKTSKLTGAW

Sequences:

>Translated_144_residues
MDDLDQALIGALRQNSRMPVSTLSAITGVSRATVAARIDRLVANGTIAAFTIRTGAEIPASGVRAIVMIEVHGKMADRVA
EQLRGLPQVRALHSTNGRWDFIAELEDRDLASFDETLRRIRLIDGITVTETNILLKTSKLTGAW
>Mature_144_residues
MDDLDQALIGALRQNSRMPVSTLSAITGVSRATVAARIDRLVANGTIAAFTIRTGAEIPASGVRAIVMIEVHGKMADRVA
EQLRGLPQVRALHSTNGRWDFIAELEDRDLASFDETLRRIRLIDGITVTETNILLKTSKLTGAW

Specific function: Activator Of Asna Transcription; Autogenous Regulator Of Its Own Transcription; And Repressor Of The Expression Of Gida At A Post-Transcriptional Level. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 15694; Mature: 15694

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDLDQALIGALRQNSRMPVSTLSAITGVSRATVAARIDRLVANGTIAAFTIRTGAEIPA
CCHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCC
SGVRAIVMIEVHGKMADRVAEQLRGLPQVRALHSTNGRWDFIAELEDRDLASFDETLRRI
CCCEEEEEEEECCHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHH
RLIDGITVTETNILLKTSKLTGAW
HHHCCCEEECCEEEEEECCCCCCC
>Mature Secondary Structure
MDDLDQALIGALRQNSRMPVSTLSAITGVSRATVAARIDRLVANGTIAAFTIRTGAEIPA
CCHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCC
SGVRAIVMIEVHGKMADRVAEQLRGLPQVRALHSTNGRWDFIAELEDRDLASFDETLRRI
CCCEEEEEEEECCHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHH
RLIDGITVTETNILLKTSKLTGAW
HHHCCCEEECCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA