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The map label for this gene is insD1 [C]

Identifier: 150398058

GI number: 150398058

Start: 2987370

End: 2988299

Strand: Reverse

Name: insD1 [C]

Synonym: Smed_2860

Alternate gene names: 150398058

Gene position: 2988299-2987370 (Counterclockwise)

Preceding gene: 150398059

Following gene: 150398057

Centisome position: 79.02

GC content: 62.9

Gene sequence:

>930_bases
ATGGTAGGGCCCGCCGCCAAGCGTGAAGCCGTCGCGCATCTGAAGGCCGTCATGGGCCTCTCGGAGCGGCGGGCCTGCCA
GATCATCTCCGCTGACCGGAAGATGGTGCGCTATCGGTCACGCCGACCGTCAGAGGCCGAACTGCGGAAGAAGCTTCGCG
ACCTCGCCAACGAGCGACGGCGTTTCGGCTACCGGCGACTGTTCGTCCTGCTCAGGCGGGAGGGAGAGCCGTCCGGCGTC
AACCGCATCTATCGGCTGTATCGCGAGGAAGGGCTTTCGGTTCGCAAGCGGAAAGCCAGGCGGCGTGCCGTCGGCACGCG
TGCGCCGATACTGGTCGAAGCGAAGGCCAATGCCCGCTGGTCGCTGGATTTCGTCCATGATCAGTTCGCCTGCGGAAGAA
GATTTCGCGTGCTCAACATCGTCGATGACGTGACGCGCGAATGCCTGGCAGCGATCCCCGACACCTCGATCTCCGGCCGT
CGTGTTGCTCGCGAATTGACGGCGCTCCTCGAGCGGCGCGGCAAGCCCGGCATGATTGTCTCCGACCATGGCACGGAATT
CACGTCGAACGCGATCCTCGCCTGGTCAAAGGAGCACAAGGTCGAGTGGCACTACATCGCACCGGGAAAGCCGATGCAGA
ACGGTTATATCGAGTCCTTCAACGGGCGGATGCGCGACGAGCTGCTGAACGAAAGCCTGTTCTTCGGTCTCGATCATGCC
CGCAGCGCCATCGCCGAATGGGCAGACGATTATAACCATTCCCGGCCGCACTCATCGCTCGGATATCAGACCCCGGCACG
CTATGCCGGAACCATCGCCGCAACCGGCTTCAACGCTGTGCAAGATGAAGGCTACGCGTTTCCGCCGGTTGCTCCCACCG
CGCCAAGTGGCGTAATGAAAACCGCCGAGGCTCTAATCGCCGCTGGATGA

Upstream 100 bases:

>100_bases
AGCGCCTGAAGGCGCTCGAAGAGGAGAACGCCAAGCTGAAGAAGCTGCTCGCCGAGCAGATGCTGGATGCCGCCGCACTC
CGCGAGCTTCTTGCAAAAAA

Downstream 100 bases:

>100_bases
AAGTTCAGTGGCAGGTCAAAGCAGTCGGGGACACGCCCGAAGAGCTTGGCTTCCCTGAATGATCGTCGTGGATTCATCCG
CTATCATTGCGATCATGTTC

Product: integrase catalytic subunit

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MVGPAAKREAVAHLKAVMGLSERRACQIISADRKMVRYRSRRPSEAELRKKLRDLANERRRFGYRRLFVLLRREGEPSGV
NRIYRLYREEGLSVRKRKARRRAVGTRAPILVEAKANARWSLDFVHDQFACGRRFRVLNIVDDVTRECLAAIPDTSISGR
RVARELTALLERRGKPGMIVSDHGTEFTSNAILAWSKEHKVEWHYIAPGKPMQNGYIESFNGRMRDELLNESLFFGLDHA
RSAIAEWADDYNHSRPHSSLGYQTPARYAGTIAATGFNAVQDEGYAFPPVAPTAPSGVMKTAEALIAAG

Sequences:

>Translated_309_residues
MVGPAAKREAVAHLKAVMGLSERRACQIISADRKMVRYRSRRPSEAELRKKLRDLANERRRFGYRRLFVLLRREGEPSGV
NRIYRLYREEGLSVRKRKARRRAVGTRAPILVEAKANARWSLDFVHDQFACGRRFRVLNIVDDVTRECLAAIPDTSISGR
RVARELTALLERRGKPGMIVSDHGTEFTSNAILAWSKEHKVEWHYIAPGKPMQNGYIESFNGRMRDELLNESLFFGLDHA
RSAIAEWADDYNHSRPHSSLGYQTPARYAGTIAATGFNAVQDEGYAFPPVAPTAPSGVMKTAEALIAAG
>Mature_309_residues
MVGPAAKREAVAHLKAVMGLSERRACQIISADRKMVRYRSRRPSEAELRKKLRDLANERRRFGYRRLFVLLRREGEPSGV
NRIYRLYREEGLSVRKRKARRRAVGTRAPILVEAKANARWSLDFVHDQFACGRRFRVLNIVDDVTRECLAAIPDTSISGR
RVARELTALLERRGKPGMIVSDHGTEFTSNAILAWSKEHKVEWHYIAPGKPMQNGYIESFNGRMRDELLNESLFFGLDHA
RSAIAEWADDYNHSRPHSSLGYQTPARYAGTIAATGFNAVQDEGYAFPPVAPTAPSGVMKTAEALIAAG

Specific function: Involved in the transposition of the insertion sequence is2 [C]

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1790724, Length=258, Percent_Identity=28.2945736434109, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789424, Length=258, Percent_Identity=28.2945736434109, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789224, Length=258, Percent_Identity=28.2945736434109, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788305, Length=258, Percent_Identity=28.2945736434109, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787669, Length=258, Percent_Identity=28.2945736434109, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1786558, Length=258, Percent_Identity=28.2945736434109, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789981, Length=240, Percent_Identity=24.1666666666667, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 34864; Mature: 34864

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGPAAKREAVAHLKAVMGLSERRACQIISADRKMVRYRSRRPSEAELRKKLRDLANERR
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
RFGYRRLFVLLRREGEPSGVNRIYRLYREEGLSVRKRKARRRAVGTRAPILVEAKANARW
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEECCCCEE
SLDFVHDQFACGRRFRVLNIVDDVTRECLAAIPDTSISGRRVARELTALLERRGKPGMIV
EEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEE
SDHGTEFTSNAILAWSKEHKVEWHYIAPGKPMQNGYIESFNGRMRDELLNESLFFGLDHA
CCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHH
RSAIAEWADDYNHSRPHSSLGYQTPARYAGTIAATGFNAVQDEGYAFPPVAPTAPSGVMK
HHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHCCCCCHHHCCCCCCCCCCCCCCHHHHH
TAEALIAAG
HHHHHHCCC
>Mature Secondary Structure
MVGPAAKREAVAHLKAVMGLSERRACQIISADRKMVRYRSRRPSEAELRKKLRDLANERR
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
RFGYRRLFVLLRREGEPSGVNRIYRLYREEGLSVRKRKARRRAVGTRAPILVEAKANARW
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEEEECCCCEE
SLDFVHDQFACGRRFRVLNIVDDVTRECLAAIPDTSISGRRVARELTALLERRGKPGMIV
EEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEE
SDHGTEFTSNAILAWSKEHKVEWHYIAPGKPMQNGYIESFNGRMRDELLNESLFFGLDHA
CCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHH
RSAIAEWADDYNHSRPHSSLGYQTPARYAGTIAATGFNAVQDEGYAFPPVAPTAPSGVMK
HHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHCCCCCHHHCCCCCCCCCCCCCCHHHHH
TAEALIAAG
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]