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The map label for this gene is yjhU [H]

Identifier: 150398056

GI number: 150398056

Start: 2985871

End: 2986803

Strand: Direct

Name: yjhU [H]

Synonym: Smed_2858

Alternate gene names: 150398056

Gene position: 2985871-2986803 (Clockwise)

Preceding gene: 150398043

Following gene: 150398062

Centisome position: 78.95

GC content: 61.52

Gene sequence:

>933_bases
ATGGGCCAGCAGGATCTGATGGCAAGGGCCGCATGGCTCTATCATGTGGAAGGACTGACGCAGGCCGAGATCGGCAAGCG
CATGAATCTCACCCGCCGCCGGGTGAACGAGCTTCTCTCATCGGCGCTGGAGCAGGGCATCGTCCGAATCAGTTTCGGCT
CACCCCTCATCGAGAACGCCGAACTGGAATCGCAGCTTCGGGATCGGTTCGGACTGGATGACGCAGTGGTGGTGCCCACC
CCTGCCGATCCGTGCCTTCTACACTCCGTCATTGGACGCGGAGCCGCCGCCTATCTCGATCGCCTGATCCAGATGCGCAA
GCCCGCATCGATCGGAGTCGGTTGGGGGGCGACGCTGCGGCAGACGATGCAGCACATGACGCCTGCCAGTGAACCCCAGA
TCGACGTGCGTTCAATGATGGGCGGCCTGACGCACGGATCGGAAATCAACACCTTCGAAATCGTCCGCGGGTTTGCGGAA
GTCCTGAAGGCGCAATGCCACTATTTCGTGGCTCCGATCTATGCCGAAACGGCGCAGTCACGCGATGCGCTCATAGCGCA
GTCGGTATTCCGCAAGACTTTCCGCCAGATCTGCGAGGTAGACATTTCCTATCTGAGCGCCGGTGACGTGTCGCAGCAAT
CGCTGCAGGTACGCTACGGCCTTCCCGAGGGTGTAGCTGTCAACGACCTCTCGGCCCTCGGTGCGGTCGGCGATCTACTC
GGCCGATATGTCGACATCCAAGGCAGCCCCGTCGATCATCCGCTCAATCGTCAGGTGCTTTCTCCGGAGTTCGAAGACTA
TCGCCGCATTCCCTGCCGCATCGTCGCCTCAGGCGGTCCGCACAAGCACGACATCCTCCTGGCTCTGGCCCGGGCAAAAC
TGCCGACGATCATGATCACCGATGCCGAGAGCGCCCGCGCAATGCTGCGGTAA

Upstream 100 bases:

>100_bases
CGTCATCGAGAAAGGCACCCACCAGAATGTCGTGGGGAAGCGATTAGATTACATATGTTACACTGGTGTGACGGGTGTAA
CAGGCAGAAGAGGGGGATGA

Downstream 100 bases:

>100_bases
GGCTTGGAACAGCTGCGTCCGCCGTGTGGAGGCCAGGCATTGCCAGGGTTCCTTCGCCGTTTCCAGCCTCTACCTCTTCG
TTCTCCTCAGGCTTGGAGCC

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MGQQDLMARAAWLYHVEGLTQAEIGKRMNLTRRRVNELLSSALEQGIVRISFGSPLIENAELESQLRDRFGLDDAVVVPT
PADPCLLHSVIGRGAAAYLDRLIQMRKPASIGVGWGATLRQTMQHMTPASEPQIDVRSMMGGLTHGSEINTFEIVRGFAE
VLKAQCHYFVAPIYAETAQSRDALIAQSVFRKTFRQICEVDISYLSAGDVSQQSLQVRYGLPEGVAVNDLSALGAVGDLL
GRYVDIQGSPVDHPLNRQVLSPEFEDYRRIPCRIVASGGPHKHDILLALARAKLPTIMITDAESARAMLR

Sequences:

>Translated_310_residues
MGQQDLMARAAWLYHVEGLTQAEIGKRMNLTRRRVNELLSSALEQGIVRISFGSPLIENAELESQLRDRFGLDDAVVVPT
PADPCLLHSVIGRGAAAYLDRLIQMRKPASIGVGWGATLRQTMQHMTPASEPQIDVRSMMGGLTHGSEINTFEIVRGFAE
VLKAQCHYFVAPIYAETAQSRDALIAQSVFRKTFRQICEVDISYLSAGDVSQQSLQVRYGLPEGVAVNDLSALGAVGDLL
GRYVDIQGSPVDHPLNRQVLSPEFEDYRRIPCRIVASGGPHKHDILLALARAKLPTIMITDAESARAMLR
>Mature_309_residues
GQQDLMARAAWLYHVEGLTQAEIGKRMNLTRRRVNELLSSALEQGIVRISFGSPLIENAELESQLRDRFGLDDAVVVPTP
ADPCLLHSVIGRGAAAYLDRLIQMRKPASIGVGWGATLRQTMQHMTPASEPQIDVRSMMGGLTHGSEINTFEIVRGFAEV
LKAQCHYFVAPIYAETAQSRDALIAQSVFRKTFRQICEVDISYLSAGDVSQQSLQVRYGLPEGVAVNDLSALGAVGDLLG
RYVDIQGSPVDHPLNRQVLSPEFEDYRRIPCRIVASGGPHKHDILLALARAKLPTIMITDAESARAMLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI87082414, Length=313, Percent_Identity=25.5591054313099, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1787791, Length=316, Percent_Identity=29.1139240506329, Blast_Score=115, Evalue=5e-27,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR007324 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 34088; Mature: 33956

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQQDLMARAAWLYHVEGLTQAEIGKRMNLTRRRVNELLSSALEQGIVRISFGSPLIENA
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCH
ELESQLRDRFGLDDAVVVPTPADPCLLHSVIGRGAAAYLDRLIQMRKPASIGVGWGATLR
HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHH
QTMQHMTPASEPQIDVRSMMGGLTHGSEINTFEIVRGFAEVLKAQCHYFVAPIYAETAQS
HHHHHCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDALIAQSVFRKTFRQICEVDISYLSAGDVSQQSLQVRYGLPEGVAVNDLSALGAVGDLL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEECCCCCCCHHHHHHHHHHHHHH
GRYVDIQGSPVDHPLNRQVLSPEFEDYRRIPCRIVASGGPHKHDILLALARAKLPTIMIT
HHEECCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEE
DAESARAMLR
CCHHHHHHCC
>Mature Secondary Structure 
GQQDLMARAAWLYHVEGLTQAEIGKRMNLTRRRVNELLSSALEQGIVRISFGSPLIENA
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCH
ELESQLRDRFGLDDAVVVPTPADPCLLHSVIGRGAAAYLDRLIQMRKPASIGVGWGATLR
HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHH
QTMQHMTPASEPQIDVRSMMGGLTHGSEINTFEIVRGFAEVLKAQCHYFVAPIYAETAQS
HHHHHCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDALIAQSVFRKTFRQICEVDISYLSAGDVSQQSLQVRYGLPEGVAVNDLSALGAVGDLL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEECCCCCCCHHHHHHHHHHHHHH
GRYVDIQGSPVDHPLNRQVLSPEFEDYRRIPCRIVASGGPHKHDILLALARAKLPTIMIT
HHEECCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEE
DAESARAMLR
CCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]