| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is sam [H]
Identifier: 150398045
GI number: 150398045
Start: 2973759
End: 2974640
Strand: Reverse
Name: sam [H]
Synonym: Smed_2847
Alternate gene names: 150398045
Gene position: 2974640-2973759 (Counterclockwise)
Preceding gene: 150398046
Following gene: 150398044
Centisome position: 78.65
GC content: 65.31
Gene sequence:
>882_bases ATGTCCGTTGATGCAACCGGCGCGCCGGTTCCGGCCAACATGCCCGGCAACCTTCGCGCTGCCGGGCTGGGTTTCCTGGC CTTCGCGGTTTTTTCCGGTACGGACGTGCTGGTGAAGCTTCTCGCGGAGCGCTTCGAGGTGCCGCAGGTAACCTTCATGG TGACGCTTGCGTCGCTCGCATTGCTCGCCGTCTATGCGGGGGTCACTGGCACCGCCGCGTCGCTCAGACCGCGTCATCCG GGGTTGGCGCTTCTGAGGGCGTTTCTGCTCGCCGTCGATACGCTCCTGATCCACTACGCCTTTTCGGTGCTGCCGCTGTC GGAAGCATATCTGCTCGCCTTTCTCACACCGGTGCTCGTGGCGGTTCTGGCATTCGCGCTTCTTGCGGAGCGCTTGTCTG CGCTTGCCTGGTCTGGTGTGGTCCTCGGATTCCTAGGGGTTGCTATCGCACTTCGACCGGGGATCGAGCCGCTCAATCTG GGTCACGCAGCAGCAGCGGGGTCGGCCCTCGTCTTCGCGCTGTCGCTCGTTCTGCTGCGACGAGCGAAGGCGACCGAGAG CGATCTTGCCCTGGTCTCGACGCTGCTCGTCGTGCTCGCCGCGGTAGCGCTGGCGGTCGCTTCGGCCGGCGGCGGACTGG CTCGCGTCGGCTCGGGCGACCTGCTGATCGCCTTTCTGGCCGGCCTCTTCATGCTCGGCGGTCATCTGCTGCTGGTCCGC GCCTTCCGTACGGGCGACGCCTCGGTGGTCGCGCCCTTTCAATACAGCCAGATCATCTGGGGCTGCCTTTTCGGCGCCCT GTTCTTTGCCGCCCCCGTCGAACTGCATACGGTCGCAGGCGCGCTCGTCATTGTGCTTTCCGGCTGGCTCGTCCTGAAAT AA
Upstream 100 bases:
>100_bases CACATCGAAATGCTGATCACCGCCTCCATGATCTACTGGATCCTTTCGATCGGGCTCGAATTCATTCAGTCCCGTATCGA AGCACGGTTCGGGCGTTTCA
Downstream 100 bases:
>100_bases CCCTTGGAGACAACAATGCCCACATCAATCGACACCGCTTCGCTGGAGATCACGTTGAGCGGCGTACACAAGTGGTACGG CCAGTATCATGCCCTTGACG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MSVDATGAPVPANMPGNLRAAGLGFLAFAVFSGTDVLVKLLAERFEVPQVTFMVTLASLALLAVYAGVTGTAASLRPRHP GLALLRAFLLAVDTLLIHYAFSVLPLSEAYLLAFLTPVLVAVLAFALLAERLSALAWSGVVLGFLGVAIALRPGIEPLNL GHAAAAGSALVFALSLVLLRRAKATESDLALVSTLLVVLAAVALAVASAGGGLARVGSGDLLIAFLAGLFMLGGHLLLVR AFRTGDASVVAPFQYSQIIWGCLFGALFFAAPVELHTVAGALVIVLSGWLVLK
Sequences:
>Translated_293_residues MSVDATGAPVPANMPGNLRAAGLGFLAFAVFSGTDVLVKLLAERFEVPQVTFMVTLASLALLAVYAGVTGTAASLRPRHP GLALLRAFLLAVDTLLIHYAFSVLPLSEAYLLAFLTPVLVAVLAFALLAERLSALAWSGVVLGFLGVAIALRPGIEPLNL GHAAAAGSALVFALSLVLLRRAKATESDLALVSTLLVVLAAVALAVASAGGGLARVGSGDLLIAFLAGLFMLGGHLLLVR AFRTGDASVVAPFQYSQIIWGCLFGALFFAAPVELHTVAGALVIVLSGWLVLK >Mature_292_residues SVDATGAPVPANMPGNLRAAGLGFLAFAVFSGTDVLVKLLAERFEVPQVTFMVTLASLALLAVYAGVTGTAASLRPRHPG LALLRAFLLAVDTLLIHYAFSVLPLSEAYLLAFLTPVLVAVLAFALLAERLSALAWSGVVLGFLGVAIALRPGIEPLNLG HAAAAGSALVFALSLVLLRRAKATESDLALVSTLLVVLAAVALAVASAGGGLARVGSGDLLIAFLAGLFMLGGHLLLVRA FRTGDASVVAPFQYSQIIWGCLFGALFFAAPVELHTVAGALVIVLSGWLVLK
Specific function: Transports S-adenosylmethionine [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 30075; Mature: 29944
Theoretical pI: Translated: 9.11; Mature: 9.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVDATGAPVPANMPGNLRAAGLGFLAFAVFSGTDVLVKLLAERFEVPQVTFMVTLASLA CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHH LLAVYAGVTGTAASLRPRHPGLALLRAFLLAVDTLLIHYAFSVLPLSEAYLLAFLTPVLV HHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVLAFALLAERLSALAWSGVVLGFLGVAIALRPGIEPLNLGHAAAAGSALVFALSLVLLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RAKATESDLALVSTLLVVLAAVALAVASAGGGLARVGSGDLLIAFLAGLFMLGGHLLLVR HHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCHHHHHH AFRTGDASVVAPFQYSQIIWGCLFGALFFAAPVELHTVAGALVIVLSGWLVLK HHCCCCCCEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHCC >Mature Secondary Structure SVDATGAPVPANMPGNLRAAGLGFLAFAVFSGTDVLVKLLAERFEVPQVTFMVTLASLA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHH LLAVYAGVTGTAASLRPRHPGLALLRAFLLAVDTLLIHYAFSVLPLSEAYLLAFLTPVLV HHHHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVLAFALLAERLSALAWSGVVLGFLGVAIALRPGIEPLNLGHAAAAGSALVFALSLVLLR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RAKATESDLALVSTLLVVLAAVALAVASAGGGLARVGSGDLLIAFLAGLFMLGGHLLLVR HHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCHHHHHH AFRTGDASVVAPFQYSQIIWGCLFGALFFAAPVELHTVAGALVIVLSGWLVLK HHCCCCCCEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA