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The map label for this gene is ydeE [H]

Identifier: 150397995

GI number: 150397995

Start: 2918560

End: 2919399

Strand: Direct

Name: ydeE [H]

Synonym: Smed_2797

Alternate gene names: 150397995

Gene position: 2918560-2919399 (Clockwise)

Preceding gene: 150397994

Following gene: 150397996

Centisome position: 77.17

GC content: 60.6

Gene sequence:

>840_bases
ATGAGTGCCATTGCAAGGGCGATCTGGTTCATCGAAAGCCATTTCGCCGAAGACATATCACTGGACGATATCGCTGCAGC
CGCCGGCCTGTCGCGCTATCATCTTTCGCGCGTGTTCGGACTTTCGGCCGGCCGCTCGATCAGCGCCTATATCCGAGGCA
GGCGCCTGAGCGGTGCCGCGCTTGACCTTGCCAACGGCACATCCGGCATTCTCGAAGTGGCCCTCGAGGCGGGCTACGGC
TCGCACGAGGCTTTCACCCGTGCCTTTCGCGAACAGTTCGGGGTGACGCCTGAATCCATCCGCAAGCAGGGGCACGTCCG
CAATATCGATCTTTTGGAGCCGATCAGAATGGACGACACACGCACTTTGAAGATCGAACCGCCCCGGTTCGAAGAAAGCC
CGGGGCTCCTTCTCGCAGGTCTCGCAGAGACCTATGACTACAACCGAACCGAAGGCATTCCTTCTCTCTGGCAGCGTTTC
AGCGCCTATTTCGGCAACATTCCCGGACAACGCGGCAACACCGCCTATGGCGTCTGCACCCAGTCCGACGGCGAGGCGGG
CCGCTTCCGCTACATGGCTGCGGCGGAAATAAGAGACAACGAAGCGCTGCCCGCAGGGTTTTCAACACTCAGGCTGCCAC
GGCAGCGTTACGCGATCTTCGTCCATCGCGGGCATATTTCTGAAATCGCCGCCACCGCCCACCACATCTTCAAGACCTGG
TTTCCGGAATCCGGCTATCGGCACGGCGAAATGCCCGACCTGATGGAGCGGTACGACGAGCGCTTCGATCCGCATTCCGG
CATGGGTGCGGTCGAGATGTGGGTGCCTTTGAAGGGCTGA

Upstream 100 bases:

>100_bases
CCGAAACACGGCGTAGCATCTTCCTGCAGTCCAGCAATTGCGATCAAACGCGCTCGCCCGAAAGGCCGTAAAACCTTGCG
TGTCCACAAAGGGAGTGACG

Downstream 100 bases:

>100_bases
TTTCCTGTGCACCGAGATTTGCCGCGGATTTCCATCGGGAATTCCACCCCTTTTCAATGACCGGAGCCGACAACGTCGCC
GTGAAAAGCACGGTGACGCT

Product: transcription activator effector binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MSAIARAIWFIESHFAEDISLDDIAAAAGLSRYHLSRVFGLSAGRSISAYIRGRRLSGAALDLANGTSGILEVALEAGYG
SHEAFTRAFREQFGVTPESIRKQGHVRNIDLLEPIRMDDTRTLKIEPPRFEESPGLLLAGLAETYDYNRTEGIPSLWQRF
SAYFGNIPGQRGNTAYGVCTQSDGEAGRFRYMAAAEIRDNEALPAGFSTLRLPRQRYAIFVHRGHISEIAATAHHIFKTW
FPESGYRHGEMPDLMERYDERFDPHSGMGAVEMWVPLKG

Sequences:

>Translated_279_residues
MSAIARAIWFIESHFAEDISLDDIAAAAGLSRYHLSRVFGLSAGRSISAYIRGRRLSGAALDLANGTSGILEVALEAGYG
SHEAFTRAFREQFGVTPESIRKQGHVRNIDLLEPIRMDDTRTLKIEPPRFEESPGLLLAGLAETYDYNRTEGIPSLWQRF
SAYFGNIPGQRGNTAYGVCTQSDGEAGRFRYMAAAEIRDNEALPAGFSTLRLPRQRYAIFVHRGHISEIAATAHHIFKTW
FPESGYRHGEMPDLMERYDERFDPHSGMGAVEMWVPLKG
>Mature_278_residues
SAIARAIWFIESHFAEDISLDDIAAAAGLSRYHLSRVFGLSAGRSISAYIRGRRLSGAALDLANGTSGILEVALEAGYGS
HEAFTRAFREQFGVTPESIRKQGHVRNIDLLEPIRMDDTRTLKIEPPRFEESPGLLLAGLAETYDYNRTEGIPSLWQRFS
AYFGNIPGQRGNTAYGVCTQSDGEAGRFRYMAAAEIRDNEALPAGFSTLRLPRQRYAIFVHRGHISEIAATAHHIFKTWF
PESGYRHGEMPDLMERYDERFDPHSGMGAVEMWVPLKG

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=166, Percent_Identity=33.7349397590361, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790497, Length=98, Percent_Identity=34.6938775510204, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87081928, Length=92, Percent_Identity=32.6086956521739, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31143; Mature: 31012

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAIARAIWFIESHFAEDISLDDIAAAAGLSRYHLSRVFGLSAGRSISAYIRGRRLSGAA
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCE
LDLANGTSGILEVALEAGYGSHEAFTRAFREQFGVTPESIRKQGHVRNIDLLEPIRMDDT
EECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCC
RTLKIEPPRFEESPGLLLAGLAETYDYNRTEGIPSLWQRFSAYFGNIPGQRGNTAYGVCT
EEEEECCCCCCCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEE
QSDGEAGRFRYMAAAEIRDNEALPAGFSTLRLPRQRYAIFVHRGHISEIAATAHHIFKTW
CCCCCCCEEEEEEEEECCCCCCCCCCHHHHHCCHHHEEEEEECCCHHHHHHHHHHHHHHH
FPESGYRHGEMPDLMERYDERFDPHSGMGAVEMWVPLKG
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCC
>Mature Secondary Structure 
SAIARAIWFIESHFAEDISLDDIAAAAGLSRYHLSRVFGLSAGRSISAYIRGRRLSGAA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCE
LDLANGTSGILEVALEAGYGSHEAFTRAFREQFGVTPESIRKQGHVRNIDLLEPIRMDDT
EECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCC
RTLKIEPPRFEESPGLLLAGLAETYDYNRTEGIPSLWQRFSAYFGNIPGQRGNTAYGVCT
EEEEECCCCCCCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEE
QSDGEAGRFRYMAAAEIRDNEALPAGFSTLRLPRQRYAIFVHRGHISEIAATAHHIFKTW
CCCCCCCEEEEEEEEECCCCCCCCCCHHHHHCCHHHEEEEEECCCHHHHHHHHHHHHHHH
FPESGYRHGEMPDLMERYDERFDPHSGMGAVEMWVPLKG
CCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]