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The map label for this gene is rpoE [H]

Identifier: 150397928

GI number: 150397928

Start: 2842057

End: 2842581

Strand: Reverse

Name: rpoE [H]

Synonym: Smed_2730

Alternate gene names: 150397928

Gene position: 2842581-2842057 (Counterclockwise)

Preceding gene: 150397929

Following gene: 150397927

Centisome position: 75.16

GC content: 63.24

Gene sequence:

>525_bases
ATGCGCCTGCGCGTTGAACGGAGACTGGAGCCTCATTATGCGCGGCTATTCGCCTATGCCGTGGCGTTGTCACGTGATCG
CGACGGAGCGCAGGATATCTTCCAGGAGTGCATCGCCCGTGCGCTCGATGCGCGAAGTGTACCCGAAGCGGAGCCTGCAT
TTCGCGCATGGCTGTTCTCCATCCTGCGGAACATTTGGATCGATCAGTCGCGCTCGCGCCGCCGCCGGTCCGACCTGGAG
CAGGAGTTCGTCACGGATCTCGTGCCCGCGCCGGTCGCGCCGGAAGCCGTGCTGGTCGATGCATTTTCCGTGCGTCAGGC
ATTTACCCGGCTCAGCACCGAACATCGGGAGATTCTCGCGCTGGTCGACATATCCGGTTTCAGCTACGAGGAGGTGGCGA
CGATGATCGCCGTGCCCAAGGGTACGGTCATGAGCCGGGTCAGCCGTGCTAGGCGGGCTCTGGCCGCTCACCTCGGCGAG
ACCAATGTCGTCGACCTTGCCCGGCAACGAGAAAGCCGCAAATGA

Upstream 100 bases:

>100_bases
CGGAATAAGCGGGGCGGTTCGCTCGTCTTTACACGCGGAGGATCGATGGAACGAACCGGAGATATCGAAGCGGGATCCCA
TGCACCCCTGATCGGGTACC

Downstream 100 bases:

>100_bases
AAGAAAACGACATCGAACCCGAAATCCTGAGTGCCTATATCGATGGTGAGCTCGAGCCGGAGGAGGCGTCGCGGGTCGCG
CGCCTGATTGCTTCCGACGA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MRLRVERRLEPHYARLFAYAVALSRDRDGAQDIFQECIARALDARSVPEAEPAFRAWLFSILRNIWIDQSRSRRRRSDLE
QEFVTDLVPAPVAPEAVLVDAFSVRQAFTRLSTEHREILALVDISGFSYEEVATMIAVPKGTVMSRVSRARRALAAHLGE
TNVVDLARQRESRK

Sequences:

>Translated_174_residues
MRLRVERRLEPHYARLFAYAVALSRDRDGAQDIFQECIARALDARSVPEAEPAFRAWLFSILRNIWIDQSRSRRRRSDLE
QEFVTDLVPAPVAPEAVLVDAFSVRQAFTRLSTEHREILALVDISGFSYEEVATMIAVPKGTVMSRVSRARRALAAHLGE
TNVVDLARQRESRK
>Mature_174_residues
MRLRVERRLEPHYARLFAYAVALSRDRDGAQDIFQECIARALDARSVPEAEPAFRAWLFSILRNIWIDQSRSRRRRSDLE
QEFVTDLVPAPVAPEAVLVDAFSVRQAFTRLSTEHREILALVDISGFSYEEVATMIAVPKGTVMSRVSRARRALAAHLGE
TNVVDLARQRESRK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19893; Mature: 19893

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLRVERRLEPHYARLFAYAVALSRDRDGAQDIFQECIARALDARSVPEAEPAFRAWLFS
CCCCHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
ILRNIWIDQSRSRRRRSDLEQEFVTDLVPAPVAPEAVLVDAFSVRQAFTRLSTEHREILA
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LVDISGFSYEEVATMIAVPKGTVMSRVSRARRALAAHLGETNVVDLARQRESRK
HHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MRLRVERRLEPHYARLFAYAVALSRDRDGAQDIFQECIARALDARSVPEAEPAFRAWLFS
CCCCHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
ILRNIWIDQSRSRRRRSDLEQEFVTDLVPAPVAPEAVLVDAFSVRQAFTRLSTEHREILA
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LVDISGFSYEEVATMIAVPKGTVMSRVSRARRALAAHLGETNVVDLARQRESRK
HHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]