| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
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The map label for this gene is pgk [H]
Identifier: 150397851
GI number: 150397851
Start: 2756802
End: 2758001
Strand: Direct
Name: pgk [H]
Synonym: Smed_2653
Alternate gene names: 150397851
Gene position: 2756802-2758001 (Clockwise)
Preceding gene: 150397850
Following gene: 150397852
Centisome position: 72.89
GC content: 64.5
Gene sequence:
>1200_bases ATGACTTTCAAGACTCTCGACGATCTGACCGACATCGCCGGCAAGCGCGTCCTCGTGCGCGTCGACCTGAACGTGCCGGT CAAGGACGGTCAGGTGACCGACACCACCCGCATCGAGCGCGTGGCGCCGACCATCCGCGAGCTCTCCGAAAAGGGTGCGA AAGTCGTCCTGCTCGCACATTTCGGGCGGCCGAAGGGCGAACCGGTCGCCGACATGTCGCTGAAGACAATCGCCTCCGCC GTCGAGGAGATCCTCGACCAGCGGGTCTATTTCGCGCCCGACTGCATCGGCGACAAAGCCGCCAATGCGATTGCCGATTT GAATGACGGCGAAGTCCTGCTCCTCGAGAACACCCGATTCCACAAGGGCGAGGAGAAGAATGATCCGGCCTTCGTCACGG CGCTCGCCGCCAATGGCGACATCTACGTCAACGACGCCTTCTCCGCCGCCCATCGCGCGCACGCCTCCACCGAGGGTCTG GCCCAGCATCTTCCCGCCTATGCAGGCCGCACCATGCAGGCGGAGCTGGAAGCGCTGGAGAAGGGGCTCGGCAATCCGCA GCGTCCAGTCGTCGCGATCGTCGGCGGCGCCAAGGTCTCTACCAAGATCGACCTTTTGCAGAATCTCGTGAAGAAGGTCG ATGCGCTGGTCATCGGCGGCGGGATGGCCAACACCTTTCTCGCCGCGCAAGGCGTGGATGTCGGGAAGTCTCTCTGCGAG CACGACCTTGCGGAAACCGCCAAGGCCATCCTCGCGGCCGCCTCGGAGGCGGGATGCGCGATCGTGCTTCCGGTGGACGG GGTTGTCGCCCGTGAATTCAAGGCCGGCGCCGACAATGAGGTCGTCGACGTCAAGGCCATCCCTGCCGACGCCATGATGC TCGACGTCGGTCCGAAGTCGATCGACGCGATCAACGAATGGATCTCGCGCGCCGAAACCCTCGTATGGAACGGCCCGCTC GGCGCCTTCGAGATCACACCCTTCGACAAGGCGACCGTGGCGGCGGCGAAACATGCGGCAGCCCGCACGCGCTCCGGCTC GCTCGTTTCGGTCGCCGGTGGCGGCGATACCGTTGCGGCACTCAATCATGCCGAGGTGGCTGACGACTTTACCTATGTGT CGACAGCCGGCGGCGCCTTCCTCGAATGGATGGAGGGCAAGCCCCTGCCGGGCGTCGATATTCTCAAGCAGCAGAGGTGA
Upstream 100 bases:
>100_bases CGGCGGATCGCAGCTTCACGGCCGAGCTGCCGGTGGACGAGCACGGCCTCGTCATCGACTACCCTACCCTGTTCCAGCGA CTATCACCGGAGACCATCTG
Downstream 100 bases:
>100_bases CGCTCAGGGGAAGCCGCCCTTGTGCACGGCTCCGCATCAGAGGATGCGGAGCGCCTCACGACCAACTCGAAACGCAAGCC GCTGAGAAGCTCGCGACGCC
Product: phosphoglycerate kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 399; Mature: 398
Protein sequence:
>399_residues MTFKTLDDLTDIAGKRVLVRVDLNVPVKDGQVTDTTRIERVAPTIRELSEKGAKVVLLAHFGRPKGEPVADMSLKTIASA VEEILDQRVYFAPDCIGDKAANAIADLNDGEVLLLENTRFHKGEEKNDPAFVTALAANGDIYVNDAFSAAHRAHASTEGL AQHLPAYAGRTMQAELEALEKGLGNPQRPVVAIVGGAKVSTKIDLLQNLVKKVDALVIGGGMANTFLAAQGVDVGKSLCE HDLAETAKAILAAASEAGCAIVLPVDGVVAREFKAGADNEVVDVKAIPADAMMLDVGPKSIDAINEWISRAETLVWNGPL GAFEITPFDKATVAAAKHAAARTRSGSLVSVAGGGDTVAALNHAEVADDFTYVSTAGGAFLEWMEGKPLPGVDILKQQR
Sequences:
>Translated_399_residues MTFKTLDDLTDIAGKRVLVRVDLNVPVKDGQVTDTTRIERVAPTIRELSEKGAKVVLLAHFGRPKGEPVADMSLKTIASA VEEILDQRVYFAPDCIGDKAANAIADLNDGEVLLLENTRFHKGEEKNDPAFVTALAANGDIYVNDAFSAAHRAHASTEGL AQHLPAYAGRTMQAELEALEKGLGNPQRPVVAIVGGAKVSTKIDLLQNLVKKVDALVIGGGMANTFLAAQGVDVGKSLCE HDLAETAKAILAAASEAGCAIVLPVDGVVAREFKAGADNEVVDVKAIPADAMMLDVGPKSIDAINEWISRAETLVWNGPL GAFEITPFDKATVAAAKHAAARTRSGSLVSVAGGGDTVAALNHAEVADDFTYVSTAGGAFLEWMEGKPLPGVDILKQQR >Mature_398_residues TFKTLDDLTDIAGKRVLVRVDLNVPVKDGQVTDTTRIERVAPTIRELSEKGAKVVLLAHFGRPKGEPVADMSLKTIASAV EEILDQRVYFAPDCIGDKAANAIADLNDGEVLLLENTRFHKGEEKNDPAFVTALAANGDIYVNDAFSAAHRAHASTEGLA QHLPAYAGRTMQAELEALEKGLGNPQRPVVAIVGGAKVSTKIDLLQNLVKKVDALVIGGGMANTFLAAQGVDVGKSLCEH DLAETAKAILAAASEAGCAIVLPVDGVVAREFKAGADNEVVDVKAIPADAMMLDVGPKSIDAINEWISRAETLVWNGPLG AFEITPFDKATVAAAKHAAARTRSGSLVSVAGGGDTVAALNHAEVADDFTYVSTAGGAFLEWMEGKPLPGVDILKQQR
Specific function: Second phase of glycolysis; second step. [C]
COG id: COG0126
COG function: function code G; 3-phosphoglycerate kinase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate kinase family [H]
Homologues:
Organism=Homo sapiens, GI4505763, Length=411, Percent_Identity=42.8223844282238, Blast_Score=294, Evalue=1e-79, Organism=Homo sapiens, GI31543397, Length=411, Percent_Identity=42.3357664233577, Blast_Score=282, Evalue=5e-76, Organism=Escherichia coli, GI1789294, Length=400, Percent_Identity=44.75, Blast_Score=304, Evalue=7e-84, Organism=Caenorhabditis elegans, GI17508823, Length=406, Percent_Identity=44.0886699507389, Blast_Score=304, Evalue=5e-83, Organism=Saccharomyces cerevisiae, GI6319857, Length=413, Percent_Identity=39.225181598063, Blast_Score=261, Evalue=2e-70, Organism=Drosophila melanogaster, GI24581203, Length=401, Percent_Identity=42.14463840399, Blast_Score=275, Evalue=4e-74, Organism=Drosophila melanogaster, GI17136394, Length=413, Percent_Identity=40.4358353510896, Blast_Score=266, Evalue=2e-71,
Paralogues:
None
Copy number: 2990 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1460 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001576 - InterPro: IPR015901 - InterPro: IPR015911 - InterPro: IPR015824 [H]
Pfam domain/function: PF00162 PGK [H]
EC number: =2.7.2.3 [H]
Molecular weight: Translated: 41931; Mature: 41800
Theoretical pI: Translated: 4.83; Mature: 4.83
Prosite motif: PS00111 PGLYCERATE_KINASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFKTLDDLTDIAGKRVLVRVDLNVPVKDGQVTDTTRIERVAPTIRELSEKGAKVVLLAH CCCCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE FGRPKGEPVADMSLKTIASAVEEILDQRVYFAPDCIGDKAANAIADLNDGEVLLLENTRF CCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHCCCCCCEEEEECCCC HKGEEKNDPAFVTALAANGDIYVNDAFSAAHRAHASTEGLAQHLPAYAGRTMQAELEALE CCCCCCCCCEEEEEEECCCCEEEECHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHH KGLGNPQRPVVAIVGGAKVSTKIDLLQNLVKKVDALVIGGGMANTFLAAQGVDVGKSLCE HHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHCCCHHHHHHHH HDLAETAKAILAAASEAGCAIVLPVDGVVAREFKAGADNEVVDVKAIPADAMMLDVGPKS HHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCCCCEEEEEECCCCEEEEECCCHH IDAINEWISRAETLVWNGPLGAFEITPFDKATVAAAKHAAARTRSGSLVSVAGGGDTVAA HHHHHHHHHHHCEEEECCCCCCEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCEEEE LNHAEVADDFTYVSTAGGAFLEWMEGKPLPGVDILKQQR ECCHHHHCCCEEEECCCCHHHHHHCCCCCCCHHHHCCCC >Mature Secondary Structure TFKTLDDLTDIAGKRVLVRVDLNVPVKDGQVTDTTRIERVAPTIRELSEKGAKVVLLAH CCCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEE FGRPKGEPVADMSLKTIASAVEEILDQRVYFAPDCIGDKAANAIADLNDGEVLLLENTRF CCCCCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHCCCCCCEEEEECCCC HKGEEKNDPAFVTALAANGDIYVNDAFSAAHRAHASTEGLAQHLPAYAGRTMQAELEALE CCCCCCCCCEEEEEEECCCCEEEECHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHH KGLGNPQRPVVAIVGGAKVSTKIDLLQNLVKKVDALVIGGGMANTFLAAQGVDVGKSLCE HHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHEEEECCCHHHHHHHHCCCHHHHHHHH HDLAETAKAILAAASEAGCAIVLPVDGVVAREFKAGADNEVVDVKAIPADAMMLDVGPKS HHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCCCCEEEEEECCCCEEEEECCCHH IDAINEWISRAETLVWNGPLGAFEITPFDKATVAAAKHAAARTRSGSLVSVAGGGDTVAA HHHHHHHHHHHCEEEECCCCCCEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCCEEEE LNHAEVADDFTYVSTAGGAFLEWMEGKPLPGVDILKQQR ECCHHHHCCCEEEECCCCHHHHHHCCCCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11481430 [H]