Click here to switch to the map view.

The map label for this gene is ydjR [C]

Identifier: 150397786

GI number: 150397786

Start: 2689795

End: 2690388

Strand: Direct

Name: ydjR [C]

Synonym: Smed_2588

Alternate gene names: 150397786

Gene position: 2689795-2690388 (Clockwise)

Preceding gene: 150397785

Following gene: 150397789

Centisome position: 71.12

GC content: 63.64

Gene sequence:

>594_bases
ATGGCTCGGCTGACGATGATGCGAATTTTGCGCTCGAGCGAGTACAGGCATATGCCCTGGAAGAACGGCGGCGGGGAGAC
GGTGGAAATCGCCGTTTCCCCGGATCGCGCCACGATTGCCGATTTCGACTGGCGCATAAGCATGGCGACCGTCGCCACCA
ACGGTTCCTTCTCAACCTTCCCCGGCGTCGATCGCACGCTCTCGATCCTCGAGGGCGGCGGGATGACGCTTTCGATCGAA
GGCCGGCAGCCGAAGCTGCTCACTGCCTCGGACGCCCCCCTCAGCTTTCCGGCCGATGTGCCGACATCGGCGGCGCTTTC
GGATGGCCCGGTCACTGACCTCAATGTGATGACGCGGCGCCAGGCGTTGAAACATCGCATGCGCAGAATTCATGTCGAGG
GCGCGCATCCGGTTGCCACGAACGCCCGCGACCTTGTTCTTTTCTGCCACCGTGGCAGCGTTGCGCTCGTGACCGGAGGC
GTCTCGGCAACCCTGCATGGGCTGGACACGGCGATCCTTGTCCAGCCTGCCAGCCTCACGCTCACGGCCGACATCGCTTC
GGAAGCTTTTCTGATAGAGATCGGCCCGGCCTGA

Upstream 100 bases:

>100_bases
TCCCGCTCAGCTTCCGCAACCTTCTGGTGATCTGGTATATTCGCGTCGTATTGAGCATACTGGTGACGGCACCGATCGTT
TGGATCGGAACATCCATGGG

Downstream 100 bases:

>100_bases
ATTCAGCGCATCCCGAAGAGCAGGAGAGCGCCACCGATCACCATGAGCGCGACGCCCAACCAGTTGCGGATGGGGCTCAG
AAAACGCAGTCCCTGCCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MARLTMMRILRSSEYRHMPWKNGGGETVEIAVSPDRATIADFDWRISMATVATNGSFSTFPGVDRTLSILEGGGMTLSIE
GRQPKLLTASDAPLSFPADVPTSAALSDGPVTDLNVMTRRQALKHRMRRIHVEGAHPVATNARDLVLFCHRGSVALVTGG
VSATLHGLDTAILVQPASLTLTADIASEAFLIEIGPA

Sequences:

>Translated_197_residues
MARLTMMRILRSSEYRHMPWKNGGGETVEIAVSPDRATIADFDWRISMATVATNGSFSTFPGVDRTLSILEGGGMTLSIE
GRQPKLLTASDAPLSFPADVPTSAALSDGPVTDLNVMTRRQALKHRMRRIHVEGAHPVATNARDLVLFCHRGSVALVTGG
VSATLHGLDTAILVQPASLTLTADIASEAFLIEIGPA
>Mature_196_residues
ARLTMMRILRSSEYRHMPWKNGGGETVEIAVSPDRATIADFDWRISMATVATNGSFSTFPGVDRTLSILEGGGMTLSIEG
RQPKLLTASDAPLSFPADVPTSAALSDGPVTDLNVMTRRQALKHRMRRIHVEGAHPVATNARDLVLFCHRGSVALVTGGV
SATLHGLDTAILVQPASLTLTADIASEAFLIEIGPA

Specific function: Unknown

COG id: COG3758

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ydjR [H]

Homologues:

Organism=Escherichia coli, GI87081963, Length=180, Percent_Identity=32.7777777777778, Blast_Score=84, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR010282 [H]

Pfam domain/function: PF05962 HutD [H]

EC number: NA

Molecular weight: Translated: 21004; Mature: 20873

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARLTMMRILRSSEYRHMPWKNGGGETVEIAVSPDRATIADFDWRISMATVATNGSFSTF
CCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCEEEEEEEEEECCCCCCC
PGVDRTLSILEGGGMTLSIEGRQPKLLTASDAPLSFPADVPTSAALSDGPVTDLNVMTRR
CCCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
QALKHRMRRIHVEGAHPVATNARDLVLFCHRGSVALVTGGVSATLHGLDTAILVQPASLT
HHHHHHHHEEECCCCCCCCCCCCEEEEEEECCCEEEEECCCEEEEECCCEEEEEECCCEE
LTADIASEAFLIEIGPA
EEEECCCCEEEEEECCC
>Mature Secondary Structure 
ARLTMMRILRSSEYRHMPWKNGGGETVEIAVSPDRATIADFDWRISMATVATNGSFSTF
CHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCEEEEEEEEEECCCCCCC
PGVDRTLSILEGGGMTLSIEGRQPKLLTASDAPLSFPADVPTSAALSDGPVTDLNVMTRR
CCCCCEEEEEECCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
QALKHRMRRIHVEGAHPVATNARDLVLFCHRGSVALVTGGVSATLHGLDTAILVQPASLT
HHHHHHHHEEECCCCCCCCCCCCEEEEEEECCCEEEEECCCEEEEECCCEEEEEECCCEE
LTADIASEAFLIEIGPA
EEEECCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2203753 [H]