Click here to switch to the map view.

The map label for this gene is yqhC [H]

Identifier: 150397774

GI number: 150397774

Start: 2673083

End: 2674024

Strand: Direct

Name: yqhC [H]

Synonym: Smed_2576

Alternate gene names: 150397774

Gene position: 2673083-2674024 (Clockwise)

Preceding gene: 150397772

Following gene: 150397776

Centisome position: 70.68

GC content: 62.31

Gene sequence:

>942_bases
ATGAAAGACATTCAAGACGCGCCGCGTCAGGAAATGATCGATATTATTGCCCGGATCGCCGGAGCGGACGGTGACCACCA
GACGAGCATACCCGGCCTCAGCATTCACCGGCATTCGGTTGCGGCGAAGCTGAACTGCGCCGCTTACAAGCCGAGTGTTG
CGATCATCGTTCAGGGGGCCAAACGTGTCGTGCTCGGCGAAGAAACACTCGTTTACGGAGCCTCCGACTACCTTCTGACC
TCGATCGACCTGCCGGTTCTCTCGCAAATATCGCTCACGTCGCCCGAAGAACCCTATCTCAGCATGACTTTCCAGATCGA
TCCGACGAGGGTTCCGGCGCTGCTCGACACCATCGGCCACGGGGCTGCGAAATCCGCAGGCTCGCCGCGCGGCATGGCGG
TGAGCAAGCTTACACCCGATCTCGAGGACACGGCGCTTCGGCTGCTGCGGCTCCTCGACAGACCGCACGACGTTCCTGTG
CTCTTGCCGCTGATCGAACAGGAACTCCTTTACCGGCTGCTGCTCGGGCCGCACGGCGCCAAGCTCCGACAAATGGCGAC
AACGGAGAGCCAGCCGCACCAGATCGGCCGTGCGGTCTCCTGGCTGAAAGAGCATTATTCCAGGCCGCTGCGCATCGAAG
ACCTCGCAAGCCGCGTCAGCATGAGCGTTTCCTCGCTGCATCACCATTTCAAGGCCATCACGGCGATGAGCCCGTTGCAA
TACCAGAAGCAGCTCCGCCTCCAGGAGGCACGGCGCCTGATGCTGGAGGAGCGCCTCGATGCCGGCAATGCCGGCCACAA
GGTCGGTTATGAGAGCCAATCCCAGTTCAGCCGCGAATATGCCCGCCACTTCGGAGAGCCGCCCTTGCGCGATGTCGGCC
GCGTTCGCCGCAATCTCATCGGCCGCACGGGCGGCGAGGCGGAGATGCTGAGCGAGGGTTAA

Upstream 100 bases:

>100_bases
ATCCTGCAAAGATCATCCATTTGCGGTAGCGTTCTGACGTAACAGACCTATGTTCCTTTCCTAGTCTCATATATCCAAGC
GTTTGGAAAGACTTCTGAAT

Downstream 100 bases:

>100_bases
TGGGAGCTTTCAGGAGGTTGTGCATACGGTAGCGGTCGCTTCGAAGAGCCGCTCAGCCTCGCTCGATGTCGCGGCGCAGC
ACGATCGAGGTGGTCAGATC

Product: AraC-like transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MKDIQDAPRQEMIDIIARIAGADGDHQTSIPGLSIHRHSVAAKLNCAAYKPSVAIIVQGAKRVVLGEETLVYGASDYLLT
SIDLPVLSQISLTSPEEPYLSMTFQIDPTRVPALLDTIGHGAAKSAGSPRGMAVSKLTPDLEDTALRLLRLLDRPHDVPV
LLPLIEQELLYRLLLGPHGAKLRQMATTESQPHQIGRAVSWLKEHYSRPLRIEDLASRVSMSVSSLHHHFKAITAMSPLQ
YQKQLRLQEARRLMLEERLDAGNAGHKVGYESQSQFSREYARHFGEPPLRDVGRVRRNLIGRTGGEAEMLSEG

Sequences:

>Translated_313_residues
MKDIQDAPRQEMIDIIARIAGADGDHQTSIPGLSIHRHSVAAKLNCAAYKPSVAIIVQGAKRVVLGEETLVYGASDYLLT
SIDLPVLSQISLTSPEEPYLSMTFQIDPTRVPALLDTIGHGAAKSAGSPRGMAVSKLTPDLEDTALRLLRLLDRPHDVPV
LLPLIEQELLYRLLLGPHGAKLRQMATTESQPHQIGRAVSWLKEHYSRPLRIEDLASRVSMSVSSLHHHFKAITAMSPLQ
YQKQLRLQEARRLMLEERLDAGNAGHKVGYESQSQFSREYARHFGEPPLRDVGRVRRNLIGRTGGEAEMLSEG
>Mature_313_residues
MKDIQDAPRQEMIDIIARIAGADGDHQTSIPGLSIHRHSVAAKLNCAAYKPSVAIIVQGAKRVVLGEETLVYGASDYLLT
SIDLPVLSQISLTSPEEPYLSMTFQIDPTRVPALLDTIGHGAAKSAGSPRGMAVSKLTPDLEDTALRLLRLLDRPHDVPV
LLPLIEQELLYRLLLGPHGAKLRQMATTESQPHQIGRAVSWLKEHYSRPLRIEDLASRVSMSVSSLHHHFKAITAMSPLQ
YQKQLRLQEARRLMLEERLDAGNAGHKVGYESQSQFSREYARHFGEPPLRDVGRVRRNLIGRTGGEAEMLSEG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=303, Percent_Identity=32.6732673267327, Blast_Score=159, Evalue=2e-40,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34646; Mature: 34646

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDIQDAPRQEMIDIIARIAGADGDHQTSIPGLSIHRHSVAAKLNCAAYKPSVAIIVQGA
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCEEEEEECC
KRVVLGEETLVYGASDYLLTSIDLPVLSQISLTSPEEPYLSMTFQIDPTRVPALLDTIGH
CEEEECCCEEEECCCCCEEEECCCHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHCC
GAAKSAGSPRGMAVSKLTPDLEDTALRLLRLLDRPHDVPVLLPLIEQELLYRLLLGPHGA
CCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCH
KLRQMATTESQPHQIGRAVSWLKEHYSRPLRIEDLASRVSMSVSSLHHHFKAITAMSPLQ
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
YQKQLRLQEARRLMLEERLDAGNAGHKVGYESQSQFSREYARHFGEPPLRDVGRVRRNLI
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
GRTGGEAEMLSEG
CCCCCCCHHCCCC
>Mature Secondary Structure
MKDIQDAPRQEMIDIIARIAGADGDHQTSIPGLSIHRHSVAAKLNCAAYKPSVAIIVQGA
CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCEEEEEECC
KRVVLGEETLVYGASDYLLTSIDLPVLSQISLTSPEEPYLSMTFQIDPTRVPALLDTIGH
CEEEECCCEEEECCCCCEEEECCCHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHCC
GAAKSAGSPRGMAVSKLTPDLEDTALRLLRLLDRPHDVPVLLPLIEQELLYRLLLGPHGA
CCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCH
KLRQMATTESQPHQIGRAVSWLKEHYSRPLRIEDLASRVSMSVSSLHHHFKAITAMSPLQ
HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
YQKQLRLQEARRLMLEERLDAGNAGHKVGYESQSQFSREYARHFGEPPLRDVGRVRRNLI
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
GRTGGEAEMLSEG
CCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]