Click here to switch to the map view.

The map label for this gene is yfjD [H]

Identifier: 150397761

GI number: 150397761

Start: 2660206

End: 2661510

Strand: Reverse

Name: yfjD [H]

Synonym: Smed_2563

Alternate gene names: 150397761

Gene position: 2661510-2660206 (Counterclockwise)

Preceding gene: 150397762

Following gene: 150397759

Centisome position: 70.37

GC content: 59.92

Gene sequence:

>1305_bases
ATGACCGATGTTATCCTTGCCTTTCTGGCCGACTACTGGCTGTCGCTGCTTTCCGTTATCTGCCTTCTCGTCATTTCGGC
GTTTTTTTCCGGTTCGGAGACCGCACTGACCGCGGCTTCGCGCTCGCGCATGCACACGCTGGAAAACAACGGTGACGAGC
GTGCCGGTATCGTCAACAATTTGATCGAGCGGCGCGACCGTCTGATCGGGACGCTGCTCATCGGCAATAATCTCGTCAAC
ATTCTCGCTTCGTCGTTGACGACGAGCCTTCTGATCGGCCTCTTCGGCGATTCCGGCGTGGCGATCGCCACCGTCGCCAT
GACGGTCCTGCTCGTCATCTTCTCCGAGGTGCTGCCAAAAAGCTGGGCGATCGCATCGCCGGATCGGTTCGCGCTGGCGG
TTGCGCCTCTGGTCCGTCCCTTCGTTGTCGTCGTCGGACCGATATCCTCCCTCGTCAACGCGATCGTTCGCCGCATCCTG
CACCTCTTCGGCGTCAACCTTTCATCCGACCTGCCGATGCTGTCGGCGCATGAAGAACTGCGCGGTGCCGTCAACCTGCT
TCATCGGGAGGGATCGGTCATCAAGGCGGACCGCGACCGGCTGGGCGGAGTGCTCGATCTCGGCGAACTCGAGGTTTCCG
ACATCATGATCCATCGCACCTCCATGCGGGCGATCAACGCGGATGATCCGCCCGAGACCTGCGTGCGCGAAATCCTCGAA
AGTCCGTTTACGCGCCTGCCATTGTGGCGCGGATCCGCCGACAACATCATCGGCGTCGTCCATTCCAAAGATCTGCTCCG
GGCGCTGGCCGAACCGAATGTGGAACCTGAGACGCTCGATATCGTCAAGATCGCGCAAAAGCCGTGGTTCGTTCCGGACT
CGACCAATCTCAAGGACCAGCTCAATGCGTTCCTTCGCCGCAAGCTGCATCTTGCCATCGTCGTCGACGAATATGGTCAG
GTGCAGGGGCTTGTCACGCTGGAGGATATTCTCGAGGAGATTGTCGGCGACATTGCCGACGAGCACGACATCGACATTCA
AGGCGTGCGTCAGGAAGCCGACGGATCGATCGTGGTCGATGGTTCCGTGCCGATCCGCGATCTCAATCGCGCGCTCGATT
GGTCATTGCCGGACGAAGAGGCGACGACGGTTGCCGGCCTCGTGATCCATGAATCCAAGAGCATTCCGGAAGAGCGGCAG
GCTTTCACGTTCTACGGCAAGCGCTTCACCGTGATGAAGCGGGTTAAAAACCGGATCACCAAATTGCGAATCCGCGCCGC
CGAGGACGAGGGGCAGGTCGGTTAG

Upstream 100 bases:

>100_bases
AGTTCACCTTCATTCTCACCAGGGGCATCGGACAGTCCTTCATCGCGGATGACGTGCCCTCCTCGGAGGTCCTAAGCTTT
CTTGAGGAAAGGATCCCGCG

Downstream 100 bases:

>100_bases
CTTGCCAGCGCGTTGGTTCACTCACCAGCGCGTCGGCTCGCCGGGCGCAGCCGGTTCCACTGCCAGGGCATGAAGACCGG
CATCGAGTTCCGGTTTCAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 433

Protein sequence:

>434_residues
MTDVILAFLADYWLSLLSVICLLVISAFFSGSETALTAASRSRMHTLENNGDERAGIVNNLIERRDRLIGTLLIGNNLVN
ILASSLTTSLLIGLFGDSGVAIATVAMTVLLVIFSEVLPKSWAIASPDRFALAVAPLVRPFVVVVGPISSLVNAIVRRIL
HLFGVNLSSDLPMLSAHEELRGAVNLLHREGSVIKADRDRLGGVLDLGELEVSDIMIHRTSMRAINADDPPETCVREILE
SPFTRLPLWRGSADNIIGVVHSKDLLRALAEPNVEPETLDIVKIAQKPWFVPDSTNLKDQLNAFLRRKLHLAIVVDEYGQ
VQGLVTLEDILEEIVGDIADEHDIDIQGVRQEADGSIVVDGSVPIRDLNRALDWSLPDEEATTVAGLVIHESKSIPEERQ
AFTFYGKRFTVMKRVKNRITKLRIRAAEDEGQVG

Sequences:

>Translated_434_residues
MTDVILAFLADYWLSLLSVICLLVISAFFSGSETALTAASRSRMHTLENNGDERAGIVNNLIERRDRLIGTLLIGNNLVN
ILASSLTTSLLIGLFGDSGVAIATVAMTVLLVIFSEVLPKSWAIASPDRFALAVAPLVRPFVVVVGPISSLVNAIVRRIL
HLFGVNLSSDLPMLSAHEELRGAVNLLHREGSVIKADRDRLGGVLDLGELEVSDIMIHRTSMRAINADDPPETCVREILE
SPFTRLPLWRGSADNIIGVVHSKDLLRALAEPNVEPETLDIVKIAQKPWFVPDSTNLKDQLNAFLRRKLHLAIVVDEYGQ
VQGLVTLEDILEEIVGDIADEHDIDIQGVRQEADGSIVVDGSVPIRDLNRALDWSLPDEEATTVAGLVIHESKSIPEERQ
AFTFYGKRFTVMKRVKNRITKLRIRAAEDEGQVG
>Mature_433_residues
TDVILAFLADYWLSLLSVICLLVISAFFSGSETALTAASRSRMHTLENNGDERAGIVNNLIERRDRLIGTLLIGNNLVNI
LASSLTTSLLIGLFGDSGVAIATVAMTVLLVIFSEVLPKSWAIASPDRFALAVAPLVRPFVVVVGPISSLVNAIVRRILH
LFGVNLSSDLPMLSAHEELRGAVNLLHREGSVIKADRDRLGGVLDLGELEVSDIMIHRTSMRAINADDPPETCVREILES
PFTRLPLWRGSADNIIGVVHSKDLLRALAEPNVEPETLDIVKIAQKPWFVPDSTNLKDQLNAFLRRKLHLAIVVDEYGQV
QGLVTLEDILEEIVGDIADEHDIDIQGVRQEADGSIVVDGSVPIRDLNRALDWSLPDEEATTVAGLVIHESKSIPEERQA
FTFYGKRFTVMKRVKNRITKLRIRAAEDEGQVG

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=407, Percent_Identity=26.2899262899263, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI40068055, Length=356, Percent_Identity=30.0561797752809, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI40068053, Length=356, Percent_Identity=30.0561797752809, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI94681046, Length=351, Percent_Identity=31.3390313390313, Blast_Score=105, Evalue=9e-23,
Organism=Homo sapiens, GI40068051, Length=309, Percent_Identity=27.831715210356, Blast_Score=83, Evalue=6e-16,
Organism=Escherichia coli, GI145693175, Length=372, Percent_Identity=37.6344086021505, Blast_Score=249, Evalue=3e-67,
Organism=Escherichia coli, GI1790664, Length=434, Percent_Identity=24.6543778801843, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1786879, Length=236, Percent_Identity=32.2033898305085, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI87082033, Length=242, Percent_Identity=30.1652892561983, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788119, Length=250, Percent_Identity=30, Blast_Score=85, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17539402, Length=367, Percent_Identity=25.3405994550409, Blast_Score=69, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6324512, Length=283, Percent_Identity=28.9752650176678, Blast_Score=77, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 47659; Mature: 47527

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS00485 A_DEAMINASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDVILAFLADYWLSLLSVICLLVISAFFSGSETALTAASRSRMHTLENNGDERAGIVNN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
LIERRDRLIGTLLIGNNLVNILASSLTTSLLIGLFGDSGVAIATVAMTVLLVIFSEVLPK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
SWAIASPDRFALAVAPLVRPFVVVVGPISSLVNAIVRRILHLFGVNLSSDLPMLSAHEEL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
RGAVNLLHREGSVIKADRDRLGGVLDLGELEVSDIMIHRTSMRAINADDPPETCVREILE
HHHHHHHHCCCCEEECCHHHCCCEEECCCCCHHHHHEEHHHHCCCCCCCCHHHHHHHHHH
SPFTRLPLWRGSADNIIGVVHSKDLLRALAEPNVEPETLDIVKIAQKPWFVPDSTNLKDQ
CCHHHCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHH
LNAFLRRKLHLAIVVDEYGQVQGLVTLEDILEEIVGDIADEHDIDIQGVRQEADGSIVVD
HHHHHHHHHEEEEEEECCCCCEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEE
GSVPIRDLNRALDWSLPDEEATTVAGLVIHESKSIPEERQAFTFYGKRFTVMKRVKNRIT
CCCCHHHHHHHHCCCCCCCHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KLRIRAAEDEGQVG
HEEEEECCCCCCCC
>Mature Secondary Structure 
TDVILAFLADYWLSLLSVICLLVISAFFSGSETALTAASRSRMHTLENNGDERAGIVNN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
LIERRDRLIGTLLIGNNLVNILASSLTTSLLIGLFGDSGVAIATVAMTVLLVIFSEVLPK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
SWAIASPDRFALAVAPLVRPFVVVVGPISSLVNAIVRRILHLFGVNLSSDLPMLSAHEEL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
RGAVNLLHREGSVIKADRDRLGGVLDLGELEVSDIMIHRTSMRAINADDPPETCVREILE
HHHHHHHHCCCCEEECCHHHCCCEEECCCCCHHHHHEEHHHHCCCCCCCCHHHHHHHHHH
SPFTRLPLWRGSADNIIGVVHSKDLLRALAEPNVEPETLDIVKIAQKPWFVPDSTNLKDQ
CCHHHCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHH
LNAFLRRKLHLAIVVDEYGQVQGLVTLEDILEEIVGDIADEHDIDIQGVRQEADGSIVVD
HHHHHHHHHEEEEEEECCCCCEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEE
GSVPIRDLNRALDWSLPDEEATTVAGLVIHESKSIPEERQAFTFYGKRFTVMKRVKNRIT
CCCCHHHHHHHHCCCCCCCHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KLRIRAAEDEGQVG
HEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]