| Definition | Sinorhizobium medicae WSM419 chromosome, complete genome. |
|---|---|
| Accession | NC_009636 |
| Length | 3,781,904 |
Click here to switch to the map view.
The map label for this gene is 150397737
Identifier: 150397737
GI number: 150397737
Start: 2636838
End: 2639492
Strand: Direct
Name: 150397737
Synonym: Smed_2539
Alternate gene names: NA
Gene position: 2636838-2639492 (Clockwise)
Preceding gene: 150397736
Following gene: 150397741
Centisome position: 69.72
GC content: 64.26
Gene sequence:
>2655_bases ATGACGCAGTTCCGTGAGGATGAAACGCCAAGACGGCCGTCATTTGCCAGAATGTTGGCGGCGAAGCGGTTTCTCGCCCG CCTCGTTCTTTTCGCGGAAGAGCTGCTGCCGCGCATGCTCCTCCCTGCTTCGCTCGTGCTTCTGTTCCTCTCCGCGGGTT GGGTCGGCCTCTTCCGGGCCGCGCCGTTCTGGCTGCACGCCGCCCTTCTCCTTGCCTTGTTTGTGGGGCTATTCTTCTCC CTGCTGCCGCTGACCCGCATTCGCTGGCCCGCAACGCCCGAGGCGGACCGGATGCTGGAGGAACGCAACCGTCTGCCGCA TCAGGCGATCCGCGTGCAGGACGATGCTCCGGCGACGGAAGGCGCTTTCGGTGCCGCGCTCTGGCGCGAGCATCAGACGC GTATGGCGCGCATGGTCCGGGAGCTCGATGCGGGTCTGCCGCGGCCCGATATTGCACGGCATGATCCGTGGGCGCTGAGG GCTATTCCCGTGCTGCTTGCCTGCATCGCCTTCGCCTATTCCTATTCGAACCGCGCCGGCCTGGTTTCCGACGCCTTCCG CCTGCCGGAGCGCGAATTGGCCGCTGCCGACATCCGTATCGATGCGTGGGTCACGCCGCCCGCCTATACCGGCCGTGCGC CCATCTTCCTCACGGGGCGGCAAGACGCGGCCACCTCCGGGCAGAACCAACCACAGGACGGGGATCCGCAGGAAAAGGCT GAGATCACGATACCCCAGTTCAGCGACCTTACGGTGCGGATTACCGGCGCAGGAACGGAGGAAAAGGTCAGATACGCCGC GGCGGGCGACGATGAGATCGTCATCCCGCCCTCGGACGCAAAGGCGGAGACTGCAGTTAAGCCTGAAGCGTCCGAGCCTG AAACGCCGAAAACATCCCCAAATGGGGTACGCAATCACATCTATAAGATCGCCAAGGACGGAACGCTTTCCGTTGGCGGC CAGAGCTGGACCTTCAAGATCACGCCGGACACCGTGCCCGACATCGCTTTCGACGGCGCGCCCCGCCCAACCGTCAATGC GGCGCTGGACATCAGCTACCTGGCCCATGACGACTACGGCATCACGCAAGCCTGGGCGGAGATCAAGCCGCTCGAGGAGC CGGCACAGAATGCCCGTCCGCTCTACGCTCCTCCCGAATATCGGCTTGATCTGCCGCGGCGCAATGCCCGGGAAGCAAAG GCCACCACGAGCCGCAATCTAAGCGAGCATCCACTTGCCGGAAAGCGCGTGAGCATCACGCTGGTCGCACGGGATGCAGC CGGTCAGGAGGGGCGAAGCGTGCCGCAGGAGATCGTTCTGCCGGCCCGCCGGTTCTTCGAACCGCTCGCCGCTGCGGTCG CCGAACAGCGGCAGGTCTTCGCACTTGACGCCAACCAATTGCCGCGCGCGATTGATCTCAACGATGCGCTGACGCTTTAT CCTGAGGAGACGATCCCGAATCCAACGCACTTCCTGCTCCTGAAATCGGCACGCACGCGCATGCAGCTCGCCCGGAACGA CGACATGCTGCGCGATGCTGCCGACCACCTGTGGGAAATCGCGCTCGGCATAGAGGACGGCGACCTGTCGCTCGCTGACC GTCGGCTGCGCGATGCCCAGCAGAAACTCTCGGACGCACTCGAGCGCAATGCTTCGGACGAGGAAATCGCCCGGTTGATG GACGAGCTCCGCCAGGCGATGCAGGAATATATGCGCGCACTTGCCGAGCAGGCCGCCAAAAATCCCGCCGTCGCCGCCAA TCCCGAAATGAACAACGTGCTGCGCCAGCAGGATCTGCAGAAGATGATGGATCAGATCGAAAATCTGGCCCGCTCGGGCG CTCGCGACCAGGCGCGGCAGATGCTCTCCGAGTTACAGAGGATGATGAACAATCTCCAGGCCGGACGGATGCAGCAGCAG ATGGGCGAGCAGAACAACGCCATGCGGCAACAGATGGACAAGCTTGGCGAGTTGATGCAGCGGCAGCAACAGCTCATGGA CGAAACCTTCAAGCTGGACCAGGCATTGCGCGACCGCATGCAGCGCGGCGATCCGCTCGACGGCGAAGACGAGGAACTCT TCGGCCAGGACATGCCCCAGGAGCCCGGGCAGCAGGGCGACCCGAACGGGCAGCCCAACCCCATGGACAACATGACCGCC GAGCAGTTGAGGGAGGCTCTCAAGCAGTTGAGGCAACAGCAGGAATCGCTGGGCAAGCAACTCGGCGAAATGCAGAAGGG ACTCGAGAACCTGGGCATCAAGCCGGGCAAAGGCTTCGGCCAGGCGCAGCGTGAGATGGAAGGTGCCGCAGGCGCACTCG GCAAGGGCCAGGGCGAGCAGGCGGTCGGCAGCCAGGGCCGGGCCCTGCAGGCCCTGCGCGAGGGTGCTCAGGACATGATG AACCAGATGCAGGCCCAGGGACAGGGGCAAGGCCCCGGGCAAGGCATTCCGCAATATGGTCAGAACGGACGTGACCCGCT TGGCCGCCGGCAGCAGAACGCCGGTCCCGATTTCGGCAACCAGGTGAAGGTGCCGGACGAGATCGACACGCAGCGCGCCC GACAGATCCTGGAAGAGATCCGGCGCAAATTGGGGGACAGCCTGTCGCCCGAACTGGAGCGGCAGTATCTTGAGCGTCTG CTCGACATGCGGTGA
Upstream 100 bases:
>100_bases TTGTCGTCCTCGCCTTCGCCACAAAGAATGTTATCCTGAAGCCAGCCTCTACCGCGGCGCGCTGTAGCGGCGCCGCGCGA TTGAAAGGAATACAGGGCGG
Downstream 100 bases:
>100_bases TAGTCTAGACCACGATGTATCAGGTCGGGTGGACCGTATGACGTGATCGGTATCAGGGAGTTCGTGCGGGCGGAAAACCG CACGAACTCTTCCTCATCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 884; Mature: 883
Protein sequence:
>884_residues MTQFREDETPRRPSFARMLAAKRFLARLVLFAEELLPRMLLPASLVLLFLSAGWVGLFRAAPFWLHAALLLALFVGLFFS LLPLTRIRWPATPEADRMLEERNRLPHQAIRVQDDAPATEGAFGAALWREHQTRMARMVRELDAGLPRPDIARHDPWALR AIPVLLACIAFAYSYSNRAGLVSDAFRLPERELAAADIRIDAWVTPPAYTGRAPIFLTGRQDAATSGQNQPQDGDPQEKA EITIPQFSDLTVRITGAGTEEKVRYAAAGDDEIVIPPSDAKAETAVKPEASEPETPKTSPNGVRNHIYKIAKDGTLSVGG QSWTFKITPDTVPDIAFDGAPRPTVNAALDISYLAHDDYGITQAWAEIKPLEEPAQNARPLYAPPEYRLDLPRRNAREAK ATTSRNLSEHPLAGKRVSITLVARDAAGQEGRSVPQEIVLPARRFFEPLAAAVAEQRQVFALDANQLPRAIDLNDALTLY PEETIPNPTHFLLLKSARTRMQLARNDDMLRDAADHLWEIALGIEDGDLSLADRRLRDAQQKLSDALERNASDEEIARLM DELRQAMQEYMRALAEQAAKNPAVAANPEMNNVLRQQDLQKMMDQIENLARSGARDQARQMLSELQRMMNNLQAGRMQQQ MGEQNNAMRQQMDKLGELMQRQQQLMDETFKLDQALRDRMQRGDPLDGEDEELFGQDMPQEPGQQGDPNGQPNPMDNMTA EQLREALKQLRQQQESLGKQLGEMQKGLENLGIKPGKGFGQAQREMEGAAGALGKGQGEQAVGSQGRALQALREGAQDMM NQMQAQGQGQGPGQGIPQYGQNGRDPLGRRQQNAGPDFGNQVKVPDEIDTQRARQILEEIRRKLGDSLSPELERQYLERL LDMR
Sequences:
>Translated_884_residues MTQFREDETPRRPSFARMLAAKRFLARLVLFAEELLPRMLLPASLVLLFLSAGWVGLFRAAPFWLHAALLLALFVGLFFS LLPLTRIRWPATPEADRMLEERNRLPHQAIRVQDDAPATEGAFGAALWREHQTRMARMVRELDAGLPRPDIARHDPWALR AIPVLLACIAFAYSYSNRAGLVSDAFRLPERELAAADIRIDAWVTPPAYTGRAPIFLTGRQDAATSGQNQPQDGDPQEKA EITIPQFSDLTVRITGAGTEEKVRYAAAGDDEIVIPPSDAKAETAVKPEASEPETPKTSPNGVRNHIYKIAKDGTLSVGG QSWTFKITPDTVPDIAFDGAPRPTVNAALDISYLAHDDYGITQAWAEIKPLEEPAQNARPLYAPPEYRLDLPRRNAREAK ATTSRNLSEHPLAGKRVSITLVARDAAGQEGRSVPQEIVLPARRFFEPLAAAVAEQRQVFALDANQLPRAIDLNDALTLY PEETIPNPTHFLLLKSARTRMQLARNDDMLRDAADHLWEIALGIEDGDLSLADRRLRDAQQKLSDALERNASDEEIARLM DELRQAMQEYMRALAEQAAKNPAVAANPEMNNVLRQQDLQKMMDQIENLARSGARDQARQMLSELQRMMNNLQAGRMQQQ MGEQNNAMRQQMDKLGELMQRQQQLMDETFKLDQALRDRMQRGDPLDGEDEELFGQDMPQEPGQQGDPNGQPNPMDNMTA EQLREALKQLRQQQESLGKQLGEMQKGLENLGIKPGKGFGQAQREMEGAAGALGKGQGEQAVGSQGRALQALREGAQDMM NQMQAQGQGQGPGQGIPQYGQNGRDPLGRRQQNAGPDFGNQVKVPDEIDTQRARQILEEIRRKLGDSLSPELERQYLERL LDMR >Mature_883_residues TQFREDETPRRPSFARMLAAKRFLARLVLFAEELLPRMLLPASLVLLFLSAGWVGLFRAAPFWLHAALLLALFVGLFFSL LPLTRIRWPATPEADRMLEERNRLPHQAIRVQDDAPATEGAFGAALWREHQTRMARMVRELDAGLPRPDIARHDPWALRA IPVLLACIAFAYSYSNRAGLVSDAFRLPERELAAADIRIDAWVTPPAYTGRAPIFLTGRQDAATSGQNQPQDGDPQEKAE ITIPQFSDLTVRITGAGTEEKVRYAAAGDDEIVIPPSDAKAETAVKPEASEPETPKTSPNGVRNHIYKIAKDGTLSVGGQ SWTFKITPDTVPDIAFDGAPRPTVNAALDISYLAHDDYGITQAWAEIKPLEEPAQNARPLYAPPEYRLDLPRRNAREAKA TTSRNLSEHPLAGKRVSITLVARDAAGQEGRSVPQEIVLPARRFFEPLAAAVAEQRQVFALDANQLPRAIDLNDALTLYP EETIPNPTHFLLLKSARTRMQLARNDDMLRDAADHLWEIALGIEDGDLSLADRRLRDAQQKLSDALERNASDEEIARLMD ELRQAMQEYMRALAEQAAKNPAVAANPEMNNVLRQQDLQKMMDQIENLARSGARDQARQMLSELQRMMNNLQAGRMQQQM GEQNNAMRQQMDKLGELMQRQQQLMDETFKLDQALRDRMQRGDPLDGEDEELFGQDMPQEPGQQGDPNGQPNPMDNMTAE QLREALKQLRQQQESLGKQLGEMQKGLENLGIKPGKGFGQAQREMEGAAGALGKGQGEQAVGSQGRALQALREGAQDMMN QMQAQGQGQGPGQGIPQYGQNGRDPLGRRQQNAGPDFGNQVKVPDEIDTQRARQILEEIRRKLGDSLSPELERQYLERLL DMR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 98635; Mature: 98504
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQFREDETPRRPSFARMLAAKRFLARLVLFAEELLPRMLLPASLVLLFLSAGWVGLFRA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH APFWLHAALLLALFVGLFFSLLPLTRIRWPATPEADRMLEERNRLPHQAIRVQDDAPATE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHEEECCCCCCCC GAFGAALWREHQTRMARMVRELDAGLPRPDIARHDPWALRAIPVLLACIAFAYSYSNRAG CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC LVSDAFRLPERELAAADIRIDAWVTPPAYTGRAPIFLTGRQDAATSGQNQPQDGDPQEKA CHHHHHHCCHHHHHHHCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC EITIPQFSDLTVRITGAGTEEKVRYAAAGDDEIVIPPSDAKAETAVKPEASEPETPKTSP EEECCCCCCEEEEEECCCCHHHEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC NGVRNHIYKIAKDGTLSVGGQSWTFKITPDTVPDIAFDGAPRPTVNAALDISYLAHDDYG CHHHHHHHHHHCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCHHHEEEHHHCCCCCC ITQAWAEIKPLEEPAQNARPLYAPPEYRLDLPRRNAREAKATTSRNLSEHPLAGKRVSIT HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEE LVARDAAGQEGRSVPQEIVLPARRFFEPLAAAVAEQRQVFALDANQLPRAIDLNDALTLY EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECHHHCCCEECCCCCEEEC PEETIPNPTHFLLLKSARTRMQLARNDDMLRDAADHLWEIALGIEDGDLSLADRRLRDAQ CHHCCCCCHHHEEEHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH QKLSDALERNASDEEIARLMDELRQAMQEYMRALAEQAAKNPAVAANPEMNNVLRQQDLQ HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH KMMDQIENLARSGARDQARQMLSELQRMMNNLQAGRMQQQMGEQNNAMRQQMDKLGELMQ HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH RQQQLMDETFKLDQALRDRMQRGDPLDGEDEELFGQDMPQEPGQQGDPNGQPNPMDNMTA HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCH EQLREALKQLRQQQESLGKQLGEMQKGLENLGIKPGKGFGQAQREMEGAAGALGKGQGEQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCH AVGSQGRALQALREGAQDMMNQMQAQGQGQGPGQGIPQYGQNGRDPLGRRQQNAGPDFGN HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCC QVKVPDEIDTQRARQILEEIRRKLGDSLSPELERQYLERLLDMR CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure TQFREDETPRRPSFARMLAAKRFLARLVLFAEELLPRMLLPASLVLLFLSAGWVGLFRA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH APFWLHAALLLALFVGLFFSLLPLTRIRWPATPEADRMLEERNRLPHQAIRVQDDAPATE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHEEECCCCCCCC GAFGAALWREHQTRMARMVRELDAGLPRPDIARHDPWALRAIPVLLACIAFAYSYSNRAG CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC LVSDAFRLPERELAAADIRIDAWVTPPAYTGRAPIFLTGRQDAATSGQNQPQDGDPQEKA CHHHHHHCCHHHHHHHCEEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC EITIPQFSDLTVRITGAGTEEKVRYAAAGDDEIVIPPSDAKAETAVKPEASEPETPKTSP EEECCCCCCEEEEEECCCCHHHEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC NGVRNHIYKIAKDGTLSVGGQSWTFKITPDTVPDIAFDGAPRPTVNAALDISYLAHDDYG CHHHHHHHHHHCCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCCHHHEEEHHHCCCCCC ITQAWAEIKPLEEPAQNARPLYAPPEYRLDLPRRNAREAKATTSRNLSEHPLAGKRVSIT HHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEE LVARDAAGQEGRSVPQEIVLPARRFFEPLAAAVAEQRQVFALDANQLPRAIDLNDALTLY EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECHHHCCCEECCCCCEEEC PEETIPNPTHFLLLKSARTRMQLARNDDMLRDAADHLWEIALGIEDGDLSLADRRLRDAQ CHHCCCCCHHHEEEHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH QKLSDALERNASDEEIARLMDELRQAMQEYMRALAEQAAKNPAVAANPEMNNVLRQQDLQ HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH KMMDQIENLARSGARDQARQMLSELQRMMNNLQAGRMQQQMGEQNNAMRQQMDKLGELMQ HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH RQQQLMDETFKLDQALRDRMQRGDPLDGEDEELFGQDMPQEPGQQGDPNGQPNPMDNMTA HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCH EQLREALKQLRQQQESLGKQLGEMQKGLENLGIKPGKGFGQAQREMEGAAGALGKGQGEQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCH AVGSQGRALQALREGAQDMMNQMQAQGQGQGPGQGIPQYGQNGRDPLGRRQQNAGPDFGN HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCC QVKVPDEIDTQRARQILEEIRRKLGDSLSPELERQYLERLLDMR CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA