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The map label for this gene is yliD [C]

Identifier: 150397639

GI number: 150397639

Start: 2519688

End: 2520506

Strand: Reverse

Name: yliD [C]

Synonym: Smed_2439

Alternate gene names: 150397639

Gene position: 2520506-2519688 (Counterclockwise)

Preceding gene: 150397640

Following gene: 150397638

Centisome position: 66.65

GC content: 65.93

Gene sequence:

>819_bases
ATGAAAAAGCTCACCCTCAACGGACTGATCGGTGGCATCCTGATCGCTGTCCTGCTCGTCACCGCTGCTGTCGGTCTCTT
CTGGACGCCCTTCGATCCGATGAAGCTCTCCTTCACCGCGCGGCTCGCAGCGCCCGGCGCGGCGCACCTGCTCGGCACTG
ACGAATTCGGCCGCGACGTATTGAGCCGCCTGATGGTCGGCGCGCGCGCCAGCGTCTGGATCGGGGCGCTCACCGTCGGT
TTCGCCGTTATCTGCGGGACGCTCATCGGCCTCATCAGCGGCTATGCGCGCGGCTGGGTGGACGGCGTCATCATGGCGGT
CAACAATGCGCTTCTCGCCTTTCCCGGCATCCTGCTGGCGCTCGGCCTGCTCGCCGTTTTCGGTGCGAACCAGTACGGCA
TCATCTTCGCGCTCGGCATCGCCTATACGCCGTCCATGGCGCGCGTCGTGCGCGGTGCGGTTCTCTCGCTGCGGGAGCGG
GAGTTCATCGAGGCCTCGCGGGTGATGGGCAATGGCGAGCTTTATACGATGTTGCGCCATATCCTGCCGAACTGCCTTGC
GCCGATCACCGTTCTCGCCACCTCCATGTTCGGCTGGGCCATATTGTCGGAGAGCGCGCTCTCCTTTCTCGGCCTCGGAG
TGCCGCCGCCGGCGCCGACCTGGGGGAACATGCTGGCCGCCGGCCGGCCATTCCTCCAGCAGGCCGCATGGCTCGGCCTG
TTCCCGGGCCTGTGCATCGCGCTGACGCTGCTCGGCATCAACCTTCTGGGCGATGCGCTTCGCGACAAGCTCGACCCGCG
CATGAGAGGTCTGAAATGA

Upstream 100 bases:

>100_bases
TCATCCAGGGATGCCTTCTGTTCGTCGCGCTCTCCTATGTGCTGGTCAACCTCGTCATCGACCTTCTTTATCCTCTCTTC
GATCCGCGTGTTGTCGCCGA

Downstream 100 bases:

>100_bases
CGACGGACAAACTTCTCACCGTCTGCGGCCTTTCGCTTGAAGTTGCGGGATCCGGCCATCAGGTGGTCAAGTCGGTTTCC
TTCGACCTCGCGCCGGGCGA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MKKLTLNGLIGGILIAVLLVTAAVGLFWTPFDPMKLSFTARLAAPGAAHLLGTDEFGRDVLSRLMVGARASVWIGALTVG
FAVICGTLIGLISGYARGWVDGVIMAVNNALLAFPGILLALGLLAVFGANQYGIIFALGIAYTPSMARVVRGAVLSLRER
EFIEASRVMGNGELYTMLRHILPNCLAPITVLATSMFGWAILSESALSFLGLGVPPPAPTWGNMLAAGRPFLQQAAWLGL
FPGLCIALTLLGINLLGDALRDKLDPRMRGLK

Sequences:

>Translated_272_residues
MKKLTLNGLIGGILIAVLLVTAAVGLFWTPFDPMKLSFTARLAAPGAAHLLGTDEFGRDVLSRLMVGARASVWIGALTVG
FAVICGTLIGLISGYARGWVDGVIMAVNNALLAFPGILLALGLLAVFGANQYGIIFALGIAYTPSMARVVRGAVLSLRER
EFIEASRVMGNGELYTMLRHILPNCLAPITVLATSMFGWAILSESALSFLGLGVPPPAPTWGNMLAAGRPFLQQAAWLGL
FPGLCIALTLLGINLLGDALRDKLDPRMRGLK
>Mature_272_residues
MKKLTLNGLIGGILIAVLLVTAAVGLFWTPFDPMKLSFTARLAAPGAAHLLGTDEFGRDVLSRLMVGARASVWIGALTVG
FAVICGTLIGLISGYARGWVDGVIMAVNNALLAFPGILLALGLLAVFGANQYGIIFALGIAYTPSMARVVRGAVLSLRER
EFIEASRVMGNGELYTMLRHILPNCLAPITVLATSMFGWAILSESALSFLGLGVPPPAPTWGNMLAAGRPFLQQAAWLGL
FPGLCIALTLLGINLLGDALRDKLDPRMRGLK

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=259, Percent_Identity=42.0849420849421, Blast_Score=201, Evalue=4e-53,
Organism=Escherichia coli, GI1789964, Length=246, Percent_Identity=47.5609756097561, Blast_Score=177, Evalue=8e-46,
Organism=Escherichia coli, GI1787760, Length=261, Percent_Identity=36.7816091954023, Blast_Score=174, Evalue=7e-45,
Organism=Escherichia coli, GI1789889, Length=242, Percent_Identity=35.9504132231405, Blast_Score=154, Evalue=4e-39,
Organism=Escherichia coli, GI1787498, Length=262, Percent_Identity=38.9312977099237, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1787549, Length=215, Percent_Identity=36.7441860465116, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1788505, Length=225, Percent_Identity=30.6666666666667, Blast_Score=96, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28714; Mature: 28714

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLTLNGLIGGILIAVLLVTAAVGLFWTPFDPMKLSFTARLAAPGAAHLLGTDEFGRDV
CCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHCCCCHHHHCCCHHHHHHH
LSRLMVGARASVWIGALTVGFAVICGTLIGLISGYARGWVDGVIMAVNNALLAFPGILLA
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLLAVFGANQYGIIFALGIAYTPSMARVVRGAVLSLREREFIEASRVMGNGELYTMLRH
HHHHHHHCCCCCHHHEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ILPNCLAPITVLATSMFGWAILSESALSFLGLGVPPPAPTWGNMLAAGRPFLQQAAWLGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHH
FPGLCIALTLLGINLLGDALRDKLDPRMRGLK
HHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC
>Mature Secondary Structure
MKKLTLNGLIGGILIAVLLVTAAVGLFWTPFDPMKLSFTARLAAPGAAHLLGTDEFGRDV
CCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHCCCCHHHHCCCHHHHHHH
LSRLMVGARASVWIGALTVGFAVICGTLIGLISGYARGWVDGVIMAVNNALLAFPGILLA
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGLLAVFGANQYGIIFALGIAYTPSMARVVRGAVLSLREREFIEASRVMGNGELYTMLRH
HHHHHHHCCCCCHHHEEHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ILPNCLAPITVLATSMFGWAILSESALSFLGLGVPPPAPTWGNMLAAGRPFLQQAAWLGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHHHHHHHHHH
FPGLCIALTLLGINLLGDALRDKLDPRMRGLK
HHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA