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The map label for this gene is ydhM [C]

Identifier: 150397633

GI number: 150397633

Start: 2512853

End: 2513488

Strand: Direct

Name: ydhM [C]

Synonym: Smed_2433

Alternate gene names: 150397633

Gene position: 2512853-2513488 (Clockwise)

Preceding gene: 150397632

Following gene: 150397634

Centisome position: 66.44

GC content: 64.31

Gene sequence:

>636_bases
ATGTCCAGACCCACCAAGCATTCCCCCGAACGCGGCAGCGCGCGCATCAGGCTCCTTGAGGCAGCGCGGGACGTTATCCG
AAGCAATGGCTTTGCTGCGACCTCGGTGGATGACCTCTGCCGCGCAGCCGACGTCACGAAGGGGGCGTTTTTCCATCACT
TCGGGAGCAAGGAAGCGCTCGGCGTGGCCGTGGCCGAGTTCTGGACCGAAACGAACACCGGCTTTTTCGAGGCCGCCCCC
TACCATGATCCGGCCGATCCCTTGGCGCGCGTCTTGGCCTATGTCGCGTTCCGGAGGGCGATCATCACCGGCGGCATAGC
GGAGTTCACCTGCCTGGTCGGAACCATGGCGCAGGAGGTCTATGCCAGTTCGCCCGACATTCGCGATGCGTGCGGCCGCA
GTATCTTCGGCCATGCGGCGACGCTCGAGGCCGATATCGAAGCTGCACGACGCGATCACGGCGTTTCCGGCGGCTGGACG
GCGGAAAGTCTCGCGCGGCATACGCAGGCCGTCATTCAGGGCGCCTTCGTCCTGGCCAAGGCCGGGAACGACGCGGATCT
GGCGCGGGAAAGCCTTGATCATTTAAGCCGCTACATCCGGCACCTGTTTCACGTCACCGAGGAGGACGATGCATGA

Upstream 100 bases:

>100_bases
CCTTCATACGCGCTGTTCAGAACCAGCTCGACAGCTCCCGCACGGGCTCACCGGCAATATCACCGATTGACATATACCGA
CCGTACGGTATGTATTATCA

Downstream 100 bases:

>100_bases
GCGAGACCACGAAAATCAGTTGTGCCTGCGGAAGCACGTGCCTGAGGCTGAAAGGAACGCCGATCCTTGTTTCCGAGTGC
CTGTGCAACAGTTGCCGGAC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSRPTKHSPERGSARIRLLEAARDVIRSNGFAATSVDDLCRAADVTKGAFFHHFGSKEALGVAVAEFWTETNTGFFEAAP
YHDPADPLARVLAYVAFRRAIITGGIAEFTCLVGTMAQEVYASSPDIRDACGRSIFGHAATLEADIEAARRDHGVSGGWT
AESLARHTQAVIQGAFVLAKAGNDADLARESLDHLSRYIRHLFHVTEEDDA

Sequences:

>Translated_211_residues
MSRPTKHSPERGSARIRLLEAARDVIRSNGFAATSVDDLCRAADVTKGAFFHHFGSKEALGVAVAEFWTETNTGFFEAAP
YHDPADPLARVLAYVAFRRAIITGGIAEFTCLVGTMAQEVYASSPDIRDACGRSIFGHAATLEADIEAARRDHGVSGGWT
AESLARHTQAVIQGAFVLAKAGNDADLARESLDHLSRYIRHLFHVTEEDDA
>Mature_210_residues
SRPTKHSPERGSARIRLLEAARDVIRSNGFAATSVDDLCRAADVTKGAFFHHFGSKEALGVAVAEFWTETNTGFFEAAPY
HDPADPLARVLAYVAFRRAIITGGIAEFTCLVGTMAQEVYASSPDIRDACGRSIFGHAATLEADIEAARRDHGVSGGWTA
ESLARHTQAVIQGAFVLAKAGNDADLARESLDHLSRYIRHLFHVTEEDDA

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22843; Mature: 22711

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRPTKHSPERGSARIRLLEAARDVIRSNGFAATSVDDLCRAADVTKGAFFHHFGSKEAL
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCHHH
GVAVAEFWTETNTGFFEAAPYHDPADPLARVLAYVAFRRAIITGGIAEFTCLVGTMAQEV
HHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
YASSPDIRDACGRSIFGHAATLEADIEAARRDHGVSGGWTAESLARHTQAVIQGAFVLAK
HCCCCCHHHHHCHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEE
AGNDADLARESLDHLSRYIRHLFHVTEEDDA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SRPTKHSPERGSARIRLLEAARDVIRSNGFAATSVDDLCRAADVTKGAFFHHFGSKEAL
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCHHH
GVAVAEFWTETNTGFFEAAPYHDPADPLARVLAYVAFRRAIITGGIAEFTCLVGTMAQEV
HHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
YASSPDIRDACGRSIFGHAATLEADIEAARRDHGVSGGWTAESLARHTQAVIQGAFVLAK
HCCCCCHHHHHCHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEE
AGNDADLARESLDHLSRYIRHLFHVTEEDDA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA