Click here to switch to the map view.

The map label for this gene is yjbI [H]

Identifier: 150397530

GI number: 150397530

Start: 2411046

End: 2411438

Strand: Direct

Name: yjbI [H]

Synonym: Smed_2330

Alternate gene names: 150397530

Gene position: 2411046-2411438 (Clockwise)

Preceding gene: 150397521

Following gene: 150397531

Centisome position: 63.75

GC content: 63.87

Gene sequence:

>393_bases
ATGACGGAACCGAAAACGACGACGCTATATGAGGCGATCGGTGGCGACCCCATCGTCCGCGCGCTGACGCAGCGCTTCTA
CGCGTTGATGGACAGTCTGCCGGAGGCGGCGCGCTGCCGCGCCATCCATCCGCCGGATCTGACCGGCAGTGAGGAAAAGT
TCTACGAATATCTGACCGGCTGGCTCGGCGGGCCGCCGATCTATGTGCAAAAGCGAGGCCATCCGATGCTGCGCCGCCGG
CACTTCATCGCCGGGATCGGGCCCGCCGAGCGCGATGAGTGGCTTCTCTGCTTTACCCGTGCGCTCGAGGAAACTGTCCT
CGACCCCGACCTCAGGGGGATCATCCTCGAGCCGATCACCCGCCTCGCCGATCACATGCAGAACAAGGAATAG

Upstream 100 bases:

>100_bases
TTTCGTCAGAGCCGCGCCGAAAAGCCGCAAGCGAGAGAATGGCACGCCATTGCCCGCCCCTGTCGCGCGCTGTACCAGAT
CTCGATCGAGGAATATGACC

Downstream 100 bases:

>100_bases
CCTTGATGTCGAACAGAGGACTGCGCTCGACCATGCTTTTCGTCGCCGGCCTCATGGGCCTGTTCGGAGTCGCGAGTGCC
GCCGCGGCTTCGCATGGCAC

Product: globin

Products: NA

Alternate protein names: Truncated Hb; trHbO; Hemoglobin-like protein yjbI; Truncated BHb [H]

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MTEPKTTTLYEAIGGDPIVRALTQRFYALMDSLPEAARCRAIHPPDLTGSEEKFYEYLTGWLGGPPIYVQKRGHPMLRRR
HFIAGIGPAERDEWLLCFTRALEETVLDPDLRGIILEPITRLADHMQNKE

Sequences:

>Translated_130_residues
MTEPKTTTLYEAIGGDPIVRALTQRFYALMDSLPEAARCRAIHPPDLTGSEEKFYEYLTGWLGGPPIYVQKRGHPMLRRR
HFIAGIGPAERDEWLLCFTRALEETVLDPDLRGIILEPITRLADHMQNKE
>Mature_129_residues
TEPKTTTLYEAIGGDPIVRALTQRFYALMDSLPEAARCRAIHPPDLTGSEEKFYEYLTGWLGGPPIYVQKRGHPMLRRRH
FIAGIGPAERDEWLLCFTRALEETVLDPDLRGIILEPITRLADHMQNKE

Specific function: Hemoglobin-like protein that exhibits a low peroxidase activity. Its very high oxygen affinity may rule out the possibility that it is involved in oxygen transport [H]

COG id: COG2346

COG function: function code R; Truncated hemoglobins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the truncated hemoglobin family. Group II subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012292
- InterPro:   IPR009050
- InterPro:   IPR019795
- InterPro:   IPR001486 [H]

Pfam domain/function: PF01152 Bac_globin [H]

EC number: NA

Molecular weight: Translated: 14863; Mature: 14732

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEPKTTTLYEAIGGDPIVRALTQRFYALMDSLPEAARCRAIHPPDLTGSEEKFYEYLTG
CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHH
WLGGPPIYVQKRGHPMLRRRHFIAGIGPAERDEWLLCFTRALEETVLDPDLRGIILEPIT
HCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
RLADHMQNKE
HHHHHHCCCC
>Mature Secondary Structure 
TEPKTTTLYEAIGGDPIVRALTQRFYALMDSLPEAARCRAIHPPDLTGSEEKFYEYLTG
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCHHHHHHHHHH
WLGGPPIYVQKRGHPMLRRRHFIAGIGPAERDEWLLCFTRALEETVLDPDLRGIILEPIT
HCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
RLADHMQNKE
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]